PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000653.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 294aa    MW: 32690.7 Da    PI: 6.8578
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000653.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-151463148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                             +g WT++Ed++l+ +++q+G g+W+  +++     +Rt++++k++w+++l
  Itr_sc000653.1_g00007.1 14 KGQWTPDEDKQLLAYIEQYGHGSWRDLPAKAAhlPKRTDNEIKNYWNTHL 63
                             799*******************99999887777779***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-23571IPR009057Homeodomain-like
SuperFamilySSF466891.44E-15873IPR009057Homeodomain-like
PROSITE profilePS5129420.672967IPR017930Myb domain
SMARTSM007176.8E-131365IPR001005SANT/Myb domain
PfamPF002492.1E-131463IPR001005SANT/Myb domain
CDDcd001673.07E-141763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGQWTPD EDKQLLAYIE QYGHGSWRDL PAKAAHLPKR TDNEIKNYWN  60
THLKKKLSKM GIDPMTHRPK INSSFGSAAN ISHMAQWETA RLEAEARLVR PSKSIASSLI  120
SPYHKPPPPP PPKVPPSLDV LKAWQETWTK PPRTRVSSDG AFLSNSTTHQ SPTTLNFSGQ  180
NLTTLNFSDQ NLTTLNFSDQ NLCYMETPYV HESSIGNPNP TGDDIIPHVA MDPLPELPTF  240
IHGFSELSPE TLTGYLDDNN VVGNYGTADL EDNSRYWNSI LNNLVASPVG SPVF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170634.11e-157PREDICTED: myb-related protein Hv1-like
TrEMBLA0A068TVP91e-72A0A068TVP9_COFCA; Uncharacterized protein
STRINGXP_008221584.14e-67(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.18e-49myb domain protein 16