PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000640.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 505aa MW: 57515.8 Da PI: 4.8117

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000640.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	165.2	5.4e-51	140	504	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 +lL + Aea+++g+ ela+ +++r++ asp g++++R+a+ + e ++ + +++s s++ +a+++f+++ Itr_sc000640.1_g00007.1 140 HHLLGAYAEAMENGHEELAEVIVKRIRGKASPLGETLERVAHSLFESTEEDQEG---------YLRQES---SKNFEQAFRAFYQI 213 79999***********************************999998888877.........344444...677788999* PP GRAS 88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 P+ +f+h++aN+aIlea+ ++ e+vHiiDfd+++G+QWp+ ++a+a + + + +lR+T +++++++ ++++eet++rL + A+ + Itr_sc000640.1_g00007.1 214 LPFGRFAHFAANSAILEALPNDaETVHIIDFDMGEGVQWPPVIEAMARK-RRALNLRLTSIKPNHESTSNQYEETKRRLYDHAKPF 298 ***************99889******************976.5668*****9999*************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe...a 246 ++++++ + ++ ++e+++++ ++ + la n++++l ++ +++++s+ e+Lk+ k+l + ++++++ e + Itr_sc000640.1_g00007.1 299 ALNLQIEEMSVE-ELAIETKTMKNNKgpgKQWLAFNCMFRLPHMA-TNMPQTSQAMEFLKIAKQLlaysetQTGIIIFAHGEsegC 382 ****6444.44456777777768999**********8.5566666699999998333333456888877663366 PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWre....rleeaGFkpv 327 ++ ++++ f ++l +y +l++s+e +p+ e+ri +E ++++ i + e + W++ ++ ++ Itr_sc000640.1_g00007.1 383 NTLTSNYTSFFNKKLVHYKSLLESIEWHFPAILsEARIALESIFIAPCINS----ESWY--------QDWEQnkmrGTCDFQLQRQ 456 777889*******************99854499***87776654....4443........3343310002345666789 PP GRAS 328 plsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 +ls ++ ak l+ + +s y+v +++++++l W++ pL+ vS W Itr_sc000640.1_g00007.1 457 TLSRENLVLAKELVGERESP-YSVSieeQKQNEMILEWRGTPLIRVSTW 504 9************966.77665456699*************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.051	113	505	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-48	140	504	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MMQPQLLLQP SWPSSYNVDY STRPRTRLCG LHEDSYVRDN YTRSPLLTTT DSFGVSSVSD 60 FSTLFPDAFT ELSSLQLQND MQILPPDGEF EDVCKWLNIS DSEDGISSEA SFSIAQSSAN 120 RLPAIFPGSG GEVDTQLSLH HLLGAYAEAM ENGHEELAEV IVKRIRGKAS PLGETLERVA 180 HSLFESTEED QEGYLRQESS KNFEQAFRAF YQILPFGRFA HFAANSAILE ALPNDAETVH 240 IIDFDMGEGV QWPPVIEAMA RKRRALNLRL TSIKPNHEST SNQYEETKRR LYDHAKPFAL 300 NLQIEEMSVE ELAIETKTMK NNKGPGKQWL AFNCMFRLPH MATNMPQTSQ AMEFLKIAKQ 360 LLAYSETQTG IIIFAHGESE GCNTLTSNYT SFFNKKLVHY KSLLESIEWH FPAILSEARI 420 ALESIFIAPC INSESWYQDW EQNKMRGTCD FQLQRQTLSR ENLVLAKELV GERESPYSVS 480 IEEQKQNEMI LEWRGTPLIR VSTWM

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MMQPQLLLQP SWPSSYNVDY STRPRTRLCG LHEDSYVRDN YTRSPLLTTT DSFGVSSVSD  60
FSTLFPDAFT ELSSLQLQND MQILPPDGEF EDVCKWLNIS DSEDGISSEA SFSIAQSSAN  120
RLPAIFPGSG GEVDTQLSLH HLLGAYAEAM ENGHEELAEV IVKRIRGKAS PLGETLERVA  180
HSLFESTEED QEGYLRQESS KNFEQAFRAF YQILPFGRFA HFAANSAILE ALPNDAETVH  240
IIDFDMGEGV QWPPVIEAMA RKRRALNLRL TSIKPNHEST SNQYEETKRR LYDHAKPFAL  300
NLQIEEMSVE ELAIETKTMK NNKGPGKQWL AFNCMFRLPH MATNMPQTSQ AMEFLKIAKQ  360
LLAYSETQTG IIIFAHGESE GCNTLTSNYT SFFNKKLVHY KSLLESIEWH FPAILSEARI  420
ALESIFIAPC INSESWYQDW EQNKMRGTCD FQLQRQTLSR ENLVLAKELV GERESPYSVS  480
IEEQKQNEMI LEWRGTPLIR VSTWM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161123.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A314KSF5	1e-172	A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein
STRING	PGSC0003DMT400068507	1e-148	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	7e-23	GRAS family protein