PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000633.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 375aa    MW: 42716.2 Da    PI: 8.3299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000633.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-111962553699
                              EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              +    + g +W+v +  r  ++ +++++GW+ F k+n+L+ g++v  +++g ++f   +k+f+k
  Itr_sc000633.1_g00003.1 196 IATLRRPGHQWRVHI--RTERDDTFFSDGWETFYKDNDLDIGEVVFYTYVGGMQF--DFKIFKK 255
                              55566789*******..999999***************************99999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-14185257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-8185254No hitNo description
SuperFamilySSF1019367.65E-12185256IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-9193255IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124203256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MENLTKDQGE SQSSSNRKIK QAYGSFEVHD FHISQTIGND DKEKKAAARQ FRRRLDRLVG  60
RPVTPTPPFF FAEKQRKVTG DASILHATRE TPDGLLAKPP LPSWRSPVWR LEPWRLPAMD  120
GVASRSAIVR TVRATAVGNW SLDLRSNILE LWKMMMVDDF EDLVMVKTRE PVVEKFELWP  180
RIAMFVKHLG KWLGEIATLR RPGHQWRVHI RTERDDTFFS DGWETFYKDN DLDIGEVVFY  240
TYVGGMQFDF KIFKKDGREK IWDSDIQNPN EESDHDNPST IPVWDLCIGI ALAVHVSGIM  300
CLVEVLPKCS VGGVWRNVVF RGGVSPLRAE GIGSLVCSAR SFSFSIPVVV LWSSDSVVSP  360
LILKYILNML LSILP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-07B3 family protein