PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000632.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 353aa    MW: 40109.8 Da    PI: 8.4716
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000632.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.54.2e-2279138357
                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Itr_sc000632.1_g00002.1  79 SRWNPTPEQLQTLEELYRRgTRTPSADQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 138
                              7*****************99**************************************97 PP
2Wus_type_Homeobox116.61.1e-3778140365
        Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Itr_sc000632.1_g00002.1  78 SSRWNPTPEQLQTLEELYRRGTRTPSADQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 140
                              79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-576143IPR001356Homeobox domain
SuperFamilySSF466891.28E-1279144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-979138IPR009057Homeodomain-like
PfamPF000468.8E-2079138IPR001356Homeobox domain
CDDcd000861.61E-680140No hitNo description
PROSITE profilePS5007111.06284139IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MWMMGYSDSG DFSMPDSFNS RRLRPLMPRP LTSSAASPNP SCALARIHGN DFVAFNHHLA  60
MAAEQSKREF NTHQVVVSSR WNPTPEQLQT LEELYRRGTR TPSADQIQHI TAQLRKYGKI  120
EGKNVFYWFQ NHKARERQKR RRQLESAAAG GAATDNDHPN VNNTNCMENT ERKELGASRT  180
GFEADQQLTK NWPSPSTLIA EKSGSIQRGT KAGMMAECRA EGWVQFEDGA EILQQRRSLH  240
EKNATWLQMM QLSSPSPPPP PTAAVATTMD YYTKQLLKLQ PHNNQDHRQH LNLLLDLPNY  300
KDHVDSDSQT LQLFPLRSGG SENENDKDTA APAMNTTFVN PHYQFFEFLP LKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153659.10.0PREDICTED: WUSCHEL-related homeobox 1 isoform X3
TrEMBLA0A1Q3CUD01e-116A0A1Q3CUD0_CEPFO; Homeobox domain-containing protein
STRINGXP_009804164.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-50WUSCHEL related homeobox 1