PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000623.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 804aa    MW: 88582.5 Da    PI: 4.9406
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000623.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-20102157156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Itr_sc000623.1_g00003.1 102 KKRYHRHTAHQIQEMETLFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 157
                              688999***********************************************998 PP
2START147.31.4e-463015262206
                              HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              la + ++elvk+  a+ep+Wv+     e+ ng+e+ + f+   +         ++ea ra++vv+m++ +lv  +ld + +W e +
  Itr_sc000623.1_g00003.1 301 LAISSMDELVKMCRAGEPLWVRGNngrEMMNGEEYSRLFPWPLGinkpessdIRVEATRATAVVIMNSITLVDAFLDAG-KWMELF 385
                              567899****************9988888888888887754333778888888**************************.****** PP

                              S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                    START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpS 150
                              +    +a+t++v+++g      g l+lm+aelqal+pl p R+ +f+Ry++q  ++g+w+ivd   ds q +   s +   +++pS
  Itr_sc000623.1_g00003.1 386 PsivaRAKTIQVVMPGvpghtnGSLHLMYAELQALTPLLPtRECYFLRYCQQnPEEGTWAIVDFPHDSLQINF-PSCFPHFKRRPS 470
                              99999***********************************************9999*************9998.578888899*** PP

                              EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              g++i++++ng+s+vtw+eh++++++ + +++  lv sg a+ga++w+a lqrqce+
  Itr_sc000623.1_g00003.1 471 GCIIQDMPNGYSRVTWIEHAEVEENPVNQIFSNLVASGEAFGARRWLAVLQRQCER 526
                              ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-1896160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2196164IPR009057Homeodomain-like
PROSITE profilePS5007117.10399159IPR001356Homeobox domain
SMARTSM003897.7E-19100163IPR001356Homeobox domain
CDDcd000864.29E-18102160No hitNo description
PfamPF000463.1E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084841.29291529IPR002913START domain
SuperFamilySSF559618.1E-30293528No hitNo description
CDDcd088752.51E-113295525No hitNo description
SMARTSM002344.0E-32300526IPR002913START domain
PfamPF018521.2E-38301526IPR002913START domain
SuperFamilySSF559611.26E-17552777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MYGDCQVLSS MAAGNGVPPP DSFFAPPQLG QNPNFGFMSN LNMPFSIFPP IIPKEEAGLL  60
MKGKDGVDSG SGSEHIEGLS GNEQETDQRR PAAEENQPAN KKKRYHRHTA HQIQEMETLF  120
KECPHPDDKQ RLKLSQDLGL KPRQVKFWFQ NRRTQMKAQQ DRSDNVVLRA ENDSLKTENY  180
RLQAALRNII CTNCGGPGIL ADLSFDEQQL RMENARLKEE YERMCCIFSQ YTGRAGQPIG  240
PSPLLPAAPL DMETAGGFPR KFEENMGNCE DMVPGPFMAE NPQFAGGPFI GEEEKPLAMD  300
LAISSMDELV KMCRAGEPLW VRGNNGREMM NGEEYSRLFP WPLGINKPES SDIRVEATRA  360
TAVVIMNSIT LVDAFLDAGK WMELFPSIVA RAKTIQVVMP GVPGHTNGSL HLMYAELQAL  420
TPLLPTRECY FLRYCQQNPE EGTWAIVDFP HDSLQINFPS CFPHFKRRPS GCIIQDMPNG  480
YSRVTWIEHA EVEENPVNQI FSNLVASGEA FGARRWLAVL QRQCERVASL MARNLSDLGV  540
IPSPEARKNM MNLAQRMIKT FCVNISTSLG QSWTSLSDSA EDTVRITTRK VTEPGQPAGL  600
ILSAVSTTWL PYHHFQVFDL LRDERHRAQL DALSNGNSLH EVAHIANGSH PGNCISLLRI  660
NVASNSSQSV ELMLQESCTD DSGSLVVYAT MDVDAIQLAM SGDDPSAVPL LPLGFVITPM  720
APPAAAQSSE PECLPESGCL LTVALQVLAS TIPTAKLNLS SVTAINHHLC NTVQQINAAL  780
SGLDDTAAAT TAAEQFPETD DEKP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155823.10.0PREDICTED: homeobox-leucine zipper protein ROC3
RefseqXP_019155824.10.0PREDICTED: homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A484KL200.0A0A484KL20_9ASTE; Uncharacterized protein
STRINGXP_009786380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7