PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000619.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 359aa MW: 37376.4 Da PI: 9.2975

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000619.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.2	6.3e-37	73	132	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e al+cprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+n+k+s Itr_sc000619.1_g00002.1 73 EVALRCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNNKRS 132 56789**************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-35	56	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MVFSSIPAYL DPSNWQQQQL NHHLQGGSSG IPTPHLAAAA APPPPPVVGG GGGSIRPGSM 60 AERARLANMP TPEVALRCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP 120 VGGGCRRNNK RSGKGGGGGA SSSSSKSTSS TTTASNDRQQ SNNSGTVSAV SGPTTAHNLL 180 GLSPQIPQLP FMSSSPIPHL SDHHYAAGIS PAADNLLGGG GDNLLGGGGG VASLLSPGGG 240 IIEPWRLQQP PQFPFLDPMY NFHGGFESPT SFIGGAPFRP RISSAMLAQL AAVKMEDNNN 300 NHTINNQESS LPRQILGINN NIINPGGNEH WSGDNNGGGG GWSDISASFS SSSTSNTHL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MVFSSIPAYL DPSNWQQQQL NHHLQGGSSG IPTPHLAAAA APPPPPVVGG GGGSIRPGSM  60
AERARLANMP TPEVALRCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP  120
VGGGCRRNNK RSGKGGGGGA SSSSSKSTSS TTTASNDRQQ SNNSGTVSAV SGPTTAHNLL  180
GLSPQIPQLP FMSSSPIPHL SDHHYAAGIS PAADNLLGGG GDNLLGGGGG VASLLSPGGG  240
IIEPWRLQQP PQFPFLDPMY NFHGGFESPT SFIGGAPFRP RISSAMLAQL AAVKMEDNNN  300
NHTINNQESS LPRQILGINN NIINPGGNEH WSGDNNGGGG GWSDISASFS SSSTSNTHL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164296.1	1e-146	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A068UG68	2e-91	A0A068UG68_COFCA; Uncharacterized protein
STRING	EOY07547	2e-82	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	5e-45	Dof family protein