PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000605.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 368aa MW: 40671.7 Da PI: 6.0959

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000605.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	157	204	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L l+P + kKl+K+++L A++YIk+Lq Itr_sc000605.1_g00008.1 157 QDHVLAERKRRENLTQRFISLSALIPGL-----KKLDKVSVLGDAIKYIKELQ 204 56999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.523	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-11	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-16	158	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-16	159	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-13	159	208	No hit	No description
SMART	SM00353	3.5E-15	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEVDDAAFVN EWMDTLDNNF VHFCPNDPFF PPACSTGNNG FYGTENSDGG VIRKPAVMNS 60 VQCQPLASSP FANSAVICNP SGGIENPVVK VKMKTEMDHR ESSGKTMISF IPSPSHQDYY 120 CSGRGNDEHR ESLIRTIEFG AGKGKTGSAV RTPLQAQDHV LAERKRRENL TQRFISLSAL 180 IPGLKKLDKV SVLGDAIKYI KELQERVRTL EEVDQEQTKR LENKELKKER VSGHDEDSSS 240 LSDSDGNCET GTAIALPEIE VRASGQNLLI RVHCNNLHNH GGVIKEIFSE IERLHLSINT 300 SHVMPFGNTT YITIAAQMDQ HFSMEAKDVA DIIRSTIVVD KALRPPYRNG GRPVGQESTT 360 SSEGSIVW

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEVDDAAFVN EWMDTLDNNF VHFCPNDPFF PPACSTGNNG FYGTENSDGG VIRKPAVMNS  60
VQCQPLASSP FANSAVICNP SGGIENPVVK VKMKTEMDHR ESSGKTMISF IPSPSHQDYY  120
CSGRGNDEHR ESLIRTIEFG AGKGKTGSAV RTPLQAQDHV LAERKRRENL TQRFISLSAL  180
IPGLKKLDKV SVLGDAIKYI KELQERVRTL EEVDQEQTKR LENKELKKER VSGHDEDSSS  240
LSDSDGNCET GTAIALPEIE VRASGQNLLI RVHCNNLHNH GGVIKEIFSE IERLHLSINT  300
SHVMPFGNTT YITIAAQMDQ HFSMEAKDVA DIIRSTIVVD KALRPPYRNG GRPVGQESTT  360
SSEGSIVW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	167	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019173021.1	1e-96	PREDICTED: uncharacterized protein LOC109168451
TrEMBL	A0A2C9UQF5	2e-56	A0A2C9UQF5_MANES; Uncharacterized protein
TrEMBL	A0A2C9UQT9	2e-56	A0A2C9UQT9_MANES; Uncharacterized protein
STRING	cassava4.1_010938m	4e-57	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4508	14	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-42	bHLH family protein