PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000605.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 327aa    MW: 37158.4 Da    PI: 4.9872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000605.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13151197455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h  +Er+RR+++N++f  L  +lP +     kK +Ka++Le+A++Y+k+Lq
  Itr_sc000605.1_g00007.1 151 DHILAERKRREKLNQKFIALSAILPAL-----KKSDKASVLEEAIRYVKELQ 197
                              6899***********************.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.599147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11151197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-13152201No hitNo description
SMARTSM003531.6E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESFEDSSVL QGWFLDLEED DECYNLGSHL QENSFDDFAA HHKSFITQEE NIVQQRSESP  60
ESYTSGYSIF MPNANNGGNI TRTATISFAG GFQFQEECFQ AADQFEEKHL KGSDDYTKKQ  120
LPTPSSATLH HNLVSGVNKG GDRERTPLSQ DHILAERKRR EKLNQKFIAL SAILPALKKS  180
DKASVLEEAI RYVKELQENV KHLEQARNTR SEKTVVKRRK VISPAGDDLW EQGQDCSDVD  240
DDKTAPEIEV MFSEKSVLIR VHSQERIPSL PTFLREIESL QLTILNSSAM PFGKTATDIT  300
LVAQMEEGFC MTTNDVVKHL QRYYTRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRE
2156161RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173045.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A443N6764e-48A0A443N676_9MAGN; Transcription factor bHLH18-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-40bHLH family protein