PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000604.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 433aa MW: 47294.3 Da PI: 4.7639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000604.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	325	365	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Itr_sc000604.1_g00017.1 325 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 365 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.983	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-13	317	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-13	320	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-12	321	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	325	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEAVGAAAFF DEEWECLSKM FSPSENGDFM FQLQCDLENG AMAMANNSQL QDGCFLSNYS 60 DVVTNNADEF HQYFSQESSN SSGGDHGFNF PSPPIYHSLM QPNDVMMMSL AQSEPLGFFV 120 VDDNIVNSSV PAVCCPNEVM GADIAVCSKE MINSGEGHQS ATVDSTKNLQ QLKRKPEKSA 180 AEDSSENPKK KPRVSRNVSS HFTHNCIDKS RLAPSGPPPN NSSAPASFNG SGNMLNLALQ 240 AYNPPDWAQK NKKGALSKSK QSPESGNEDH QEDQEERNAQ TSSCSSSDHQ DESLELNRDA 300 PNSNSSGKAR ASRGAATDPQ SLYARRRRER INERLRILQN LVPNGTKVDI STMLEEAVHY 360 VKFLQLQIKD TESSHSSSTV RVTPNVVDSL CAPAGTGPPT LSVLLSSEDL WMYAPIAYNG 420 MDIGVYQKML PSL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEAVGAAAFF DEEWECLSKM FSPSENGDFM FQLQCDLENG AMAMANNSQL QDGCFLSNYS  60
DVVTNNADEF HQYFSQESSN SSGGDHGFNF PSPPIYHSLM QPNDVMMMSL AQSEPLGFFV  120
VDDNIVNSSV PAVCCPNEVM GADIAVCSKE MINSGEGHQS ATVDSTKNLQ QLKRKPEKSA  180
AEDSSENPKK KPRVSRNVSS HFTHNCIDKS RLAPSGPPPN NSSAPASFNG SGNMLNLALQ  240
AYNPPDWAQK NKKGALSKSK QSPESGNEDH QEDQEERNAQ TSSCSSSDHQ DESLELNRDA  300
PNSNSSGKAR ASRGAATDPQ SLYARRRRER INERLRILQN LVPNGTKVDI STMLEEAVHY  360
VKFLQLQIKD TESSHSSSTV RVTPNVVDSL CAPAGTGPPT LSVLLSSEDL WMYAPIAYNG  420
MDIGVYQKML PSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155945.1	0.0	PREDICTED: transcription factor bHLH54-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27740.1	5e-28	root hair defective 6-like 4