PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000602.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BBR-BPC

Protein Properties

Length: 311aa MW: 34283.1 Da PI: 10.2017

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000602.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	317.2	5.1e-97	1	311	1	301
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki...rernl..alsekkaavaerd...................... 57 md +g+ + +n+g+++p+ ++lk++lglqlm +iae+ r+r++ ++++ + Itr_sc000602.1_g00009.1 1 MDGHGNLNlKNWGFFDPTaTALKSHLGLQLMPTIAEKPLFGgggRDRHHhyQPHHPHLSA---Vmastspglyqhhrvggisesam 83 99999999****9999**********98765557775544400233332222...12334566666667799999998 PP GAGA_bind 58 .maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaae 142 +++ +rd+++++ ++k+l++l ++ +++ +g++vl++t+s++s+++l++++l ++ + +++e ++++++ Itr_sc000602.1_g00009.1 84 pVEY-MRDAWFNH-------SREKCLNVLSGNQ---HHHQPGYGVLPETSSAQSIHTLQHTNLLKTETASSHME------VVCEEK 152 8889.99999999.......4556666665333...567799***********99988877666644444......444444 PP GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228 + + kk+++ +++++k++kakk+k+ ++ + ++ ++ ++ +r++a+k+s ++v+ng+s+D+s++PvPvCsCtG ++qCY+WG+G Itr_sc000602.1_g00009.1 153 VGSALVKKREGDKSQVQKSPKAKKAKRGPRMPIDECTPTQSISRARAPKRSAEVVINGMSMDISGIPVPVCSCTGNPQQCYRWGSG 238 4444444555667778888888888888888888888877779*************************************** PP GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GWqSaCCtt++S yPLP+stkrrgaRiagrKmS gafkk+LekLa+eGy++snp+DLk +WAkHGtnkfvtir Itr_sc000602.1_g00009.1 239 GWQSACCTTNLSSYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLASEGYNFSNPIDLKPYWAKHGTNKFVTIR 311 **********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.9E-99	1	311	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.0E-138	1	311	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDGHGNLNLK NWGFFDPTAT ALKSHLGLQL MPTIAEKPLF GGGGRDRHHH YQPHHPHLSA 60 VMASTSPGLY QHHRVGGISE SAMPVEYMRD AWFNHSREKC LNVLSGNQHH HQPGYGVLPE 120 TSSAQSIHTL QHTNLLKTET ASSHMEVVCE EKVGSALVKK REGDKSQVQK SPKAKKAKRG 180 PRMPIDECTP TQSISRARAP KRSAEVVING MSMDISGIPV PVCSCTGNPQ QCYRWGSGGW 240 QSACCTTNLS SYPLPMSTKR RGARIAGRKM SLGAFKKVLE KLASEGYNFS NPIDLKPYWA 300 KHGTNKFVTI R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167244.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_019167245.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2G9HQ94	1e-132	A0A2G9HQ94_9LAMI; Uncharacterized protein
STRING	XP_009761371.1	1e-131	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-82	basic pentacysteine 2