PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000583.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 262aa MW: 30182.7 Da PI: 4.7009

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000583.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le++Fe +++++ e++ ++A++lgL+ rq+ +WFqNrRa++k Itr_sc000583.1_g00017.1 55 KKRRLSVEQVHALEKVFEVDNKLDPERKVKIAAELGLQPRQIAIWFQNRRARYK 108 566899***********************************************9 PP
2	HD-ZIP_I/II	123.8	8.2e-40	55	145	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kkrrls eqv++LE+ Fe ++kL+perKv++a eLglqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++y++l+ + ++e+e+e L Itr_sc000583.1_g00017.1 55 KKRRLSVEQVHALEKVFEVDNKLDPERKVKIAAELGLQPRQIAIWFQNRRARYKTKQLERDYNLLKANYESLHLNYIKIEQEKEGL 140 9************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 +elk Itr_sc000583.1_g00017.1 141 IAELK 145 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.73	50	110	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	53	114	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-16	55	108	IPR001356	Homeobox domain
CDD	cd00086	2.69E-18	55	111	No hit	No description
SuperFamily	SSF46689	2.67E-19	55	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-19	57	117	IPR009057	Homeodomain-like
PRINTS	PR00031	1.4E-5	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	90	106	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.6E-12	110	150	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKRFSFCDSS ATLLYPPQEK DMKENLVYSG ELQAMLDGLD DEDSVEENVG IMNGKKRRLS 60 VEQVHALEKV FEVDNKLDPE RKVKIAAELG LQPRQIAIWF QNRRARYKTK QLERDYNLLK 120 ANYESLHLNY IKIEQEKEGL IAELKGLKEK QLVEENKECN HSAHENQDPS APRNCGLSSE 180 TKDLMDFKDG SSDSDSSGVL NNEDCSFHYP PLMPPKSSSL YQPQFVKMEE QASGFNAEDS 240 CNIFSLDQPP NLYWYCGDYR NY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARYKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174158.1	1e-160	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1S3Z7G3	9e-95	A0A1S3Z7G3_TOBAC; homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1S4C0F4	6e-95	A0A1S4C0F4_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRING	PGSC0003DMT400079230	2e-83	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-48	homeobox protein 16