PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000577.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 527aa    MW: 56868.4 Da    PI: 6.9935
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000577.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.6e-34246302259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++++ei+Y+g+Hnh+
  Itr_sc000577.1_g00001.1 246 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPKCPVKKKVERSL-EGQITEIIYKGQHNHP 302
                              8****************************************.***************8 PP
2WRKY107.37.5e-34414472159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k++er+a+dpk+v++tYeg+Hnh+
  Itr_sc000577.1_g00001.1 414 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSPGCNVRKHIERAANDPKAVITTYEGKHNHD 472
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-29242304IPR003657WRKY domain
SuperFamilySSF1182904.18E-26244304IPR003657WRKY domain
SMARTSM007741.4E-37245303IPR003657WRKY domain
PROSITE profilePS5081123.158246304IPR003657WRKY domain
PfamPF031067.9E-26246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37399474IPR003657WRKY domain
SuperFamilySSF1182901.27E-29406474IPR003657WRKY domain
PROSITE profilePS5081138.48409474IPR003657WRKY domain
SMARTSM007743.1E-39414473IPR003657WRKY domain
PfamPF031065.8E-26415472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAKNDGGSSS SSAASRSAPE RPTITLPPRS SVESLFTGGF MSGISPGPMT LVSNFFSEGD  60
SYSECPSFSQ LLAGAMASPA AFGGVRPPPP PQPVEAKEES GGGSGGDSDF RLKHNRPAGL  120
AITQQSMFTI PPGLSPTTLL DSPGFSALFS PGQGAFGMSH QQALAQVTTQ AAQAQVQMHI  180
QPDYSSSSAA PATSYSQLQT IASNATINQQ VPSQASDHNI MKESSEVSHS DQRIEPASFP  240
VDKPADDGYN WRKYGQKHVK GSEFPRSYYK CTHPKCPVKK KVERSLEGQI TEIIYKGQHN  300
HPPPQNRKGA KDPGNSNGLY ALQGGSELSS EGLTTNFNKP KDQESSQATH EHASGSSESE  360
EVGDAETRAD GGDDDERESK RRAIEMQVPD PAASHRTVTE PRIIVQTTSE VDLLDDGYRW  420
RKYGQKVVKG NPYPRSYYKC TSPGCNVRKH IERAANDPKA VITTYEGKHN HDVPAARNSS  480
HNTSNNNTGP QLRPHNVAGQ QQAALRTDYS SNEQQVALLR FKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-43246475878Probable WRKY transcription factor 4
2lex_A4e-43246475878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164716.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-176WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A328D8250.0A0A328D825_9ASTE; Uncharacterized protein
STRINGXP_009619961.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-152WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]