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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000576.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | CPP | ||||||||
Protein Properties | Length: 801aa MW: 86928.2 Da PI: 6.5486 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.5 | 4.2e-16 | 511 | 547 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Itr_sc000576.1_g00003.1 511 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNK 547 89**********************************8 PP | |||||||
2 | TCR | 51.1 | 2.7e-16 | 590 | 628 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Itr_sc000576.1_g00003.1 590 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 628 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.9E-17 | 509 | 550 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.705 | 510 | 630 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.2E-12 | 512 | 547 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-18 | 590 | 631 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.9E-12 | 592 | 628 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MGGVEANLQS ENAERKSSGS EVGGSEEGGP AVMDTPDRTK INQIVTPLSK IEESPVFNFL 60 NSLSPIEPVK SAHITQTFNS LSFSSSPSVF TSPHMSMLKE SRFLRRHQLP DPSKPEFSSD 120 NDHKVNSSQV HNLDVSDNMS EQPESYLGSC TIEASIRASY EFSKLAVELV KSLDYDCSSP 180 NSSTVANCDI KHKSFSALAG SSDTIVPVAN DVAGKKSSLR TQVNMEGASQ IDRNEEDAGC 240 DFEGLISGTG DTLIFDSPND TGTIKKEVDP ISRTYSFVRN EIQNIKTFSA VGSGENVEEI 300 IETENQSTQS GEGSELNQYA EVQDINPDSS VCIKSLVGCT SEKMEADMVS GLNRGIRRRC 360 LVFDMTGIRK KHLDENTGSD SGSSLWTQSD GNTTSTDKHL VGTKSRCEPS RCVLPGIGLH 420 LNALAVAAKD GHAVKHEALA SGQQLLVAPG STANYRSLTL ISKARVALED GIHLNEDANQ 480 SPGYSVNEEL NQSSSPRKKK RRMESGESEG CKRCNCKKSK CLKLYCECFA AGVYCVEPCS 540 CQDCFNKPIY EDTVIATRKQ IESRNPLAFA PKVIRATETL AEIGTPASAR HKRGCNCKKS 600 GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGTEAELE EEETNIHEKG CIDESSQKSA 660 LHTEIQQMPD SFLPATPLRS KRPPMQPPVL KNKPTRMPSI LGVGSSSGGT YAASQGLGRP 720 RFFRPLPKFH KQFESIEEDE IPSTLQGNTS PTSGIVKSTS PNSKRVSPPH TEFETSPGRR 780 SSSRKLILQS IPSFPSLTPN N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-18 | 512 | 627 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 7e-18 | 512 | 627 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 497 | 501 | KKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019155008.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A1U7W7L2 | 0.0 | A0A1U7W7L2_NICSY; protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
STRING | XP_009770238.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2467 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-131 | TESMIN/TSO1-like CXC 2 |