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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000573.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 304aa MW: 33817.6 Da PI: 9.6423 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.2e-07 | 6 | 50 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT +E+ + a + g +Wk+Ia+ ++ g+++k++ +++ Itr_sc000573.1_g00004.1 6 ATWTWDEERMFQIALSTYVEGtrnRWKKIAELIP-GKSAKDVEEYY 50 57***************9999999**********.*******9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.609 | 1 | 50 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.0E-6 | 4 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-6 | 6 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-8 | 7 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-7 | 7 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 8 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MANQRATWTW DEERMFQIAL STYVEGTRNR WKKIAELIPG KSAKDVEEYY PILKANIEAM 60 ESSFTQLQTN TNNAPSSSQQ RGENEEVGSV WDLDELVSCS QGVQCKVNLG PWYNLPVLIP 120 WTAVHNALWT KGTAVARKGG SFIRLFSLIK TMLFCPLDHN ACSGEPGSPA SSPPSRRPPS 180 AARDSKSRRL LELEEQRRRR LKEKRRSMSP PPGTSSAAAI FLQARRRPSS AACNSMLRCH 240 LGQHCPLPST EVAGALTITK GTGELSGESK IVTCDFSYSK GLFLKTFAMA TLEAFAFRVL 300 YTFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 6e-10 | Homeodomain-like transcriptional regulator |