PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000571.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 574aa MW: 63136.7 Da PI: 6.7691 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.5 | 7.1e-36 | 203 | 333 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++++ +++ + + +++ ++++ Itr_sc000571.1_g00009.1 203 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELPAWKPNTVnpNFDQEDAQKQHR 288 79**************************************************************8888877744333333333333 PP TCP 86 ssg...........................................k 89 + Itr_sc000571.1_g00009.1 289 --EtpgdanlldnvagpskrgmimqesenessflppsldsdsiadtI 333 ..224666777777655555555555544555555555555555542 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.8E-32 | 203 | 311 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.521 | 205 | 263 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MRLQRTLILL SDPRLPPSPL ASTPLITQTR IHLPPSSSSS SSSCSSSLEM NTLGCLGEEV 60 GETERGISIV LIGVGRAERI EEWEVGWVVS DFREWEKPLR KSCVYQKLDP QRNQQQKQHH 120 RLHFSDQIQG EEEEEDPSGN PPPPPPKKRS YFPSTEEHAR LRGRMGENRQ QQQQQQGSSS 180 RLGLRNAGGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLAAHTA IQFYDVQDRL 240 GYDRPSKAVD WLIKKAKPAI DELAELPAWK PNTVNPNFDQ EDAQKQHRET PGDANLLDNV 300 AGPSKRGMIM QESENESSFL PPSLDSDSIA DTIKSFFPMG ASEQPNSSSM QFQTFAQHSD 360 LLSRSQSQDL RLSLQSFQDP TILLHHQNQQ AQHHPNPGSH RAILTGFDAS GWAEHNQQNQ 420 QRFPAWHGGG GGDGAAAAAT CSSSGSGGAA AASATGGYLF NSPQQPLFQQ LFGGQNQFFP 480 SQRGPLQSSY TPSVRAWMDP SPAIAIASVD PNQQHQHYQS AMLPIYPSSL SGIGFSTGVG 540 EFSGFRIPAR IQGEEEEHDG ISDKPSSASS DSRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 210 | 263 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 210 | 263 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM357790 | 0.0 | HM357790.2 Ipomoea nil TCP family transcription factor TCP4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019154084.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_019154085.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_019154087.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 3e-92 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | E2GIJ0 | 0.0 | E2GIJ0_IPONI; TCP family transcription factor TCP4 | ||||
STRING | XP_009630327.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 5e-51 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |