PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000568.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 158aa MW: 17809.2 Da PI: 4.4684

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000568.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	74.8	1.4e-23	11	99	3	91
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf dy+e++ +++ Itr_sc000568.1_g00007.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDCQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALDVLGFGDYIEEVYSAYEQH 98 6899***************************************************************************987666655 PP NF-YB 91 r 91 r Itr_sc000568.1_g00007.1 99 R 99 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.0E-38	9	140	IPR009072	Histone-fold
SuperFamily	SSF47113	8.06E-35	12	142	IPR009072	Histone-fold
Pfam	PF00808	1.7E-20	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDCQ DLLIECCVEF INLISSESNE 60 VCNREDKRTI APEHVLKALD VLGFGDYIEE VYSAYEQHRL ETMDTVRAGK LSNGAEMTEE 120 EALAAQQRMF AEARARMNNG ITVPKQPNPE PEQHNTNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	6e-34	12	134	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167225.1	1e-112	PREDICTED: protein Dr1 homolog isoform X2
Swissprot	P49592	1e-88	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A484NC55	2e-95	A0A484NC55_9ASTE; Uncharacterized protein
STRING	Migut.D01587.1.p	2e-95	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3820	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	9e-93	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]