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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000564.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 463aa MW: 51090.6 Da PI: 5.6996 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.5e-17 | 46 | 90 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++v+a k++G W++I +++g ++t q++s+ qk+ Itr_sc000564.1_g00003.1 46 RERWTEEEHQRFVEALKLYGRA-WRKIEEHVG-TKTVIQIRSHAQKF 90 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-16 | 40 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.261 | 41 | 95 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.5E-17 | 44 | 93 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.0E-13 | 45 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-8 | 45 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-13 | 46 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.37E-10 | 48 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MVAEAMDQSD GNSGAVSSAV KAGVSSSLGS EYLPKVRKPY TITKQRERWT EEEHQRFVEA 60 LKLYGRAWRK IEEHVGTKTV IQIRSHAQKF FTKVGRDLGN DGDGPIEIPP PRPKKKPLHP 120 YPRKMVDSSK PEMEVLGQSE MSPSKIYNGE RDNQSPDSVL SAIGSDDMES PVAELQHTQR 180 SPASCTSDAD SPNLAPIEND NECLTSNSSV EKKGSVASVG VTAKSSLPTD NSSAKLDLLS 240 RDTLSSVKES TRDDTPASFR LFGQTVSVSI AVADSSKQEP DNFKSEPLDA AREENEVNDN 300 TTVEGLPNHV NSQFVYTMVP HSMIPPASWF PQFLPNKDSN STVGAKPTTM PPWWSWYQDL 360 MHRYFSSCSH VAAQTTYPEE DFKHSRPQRE RSSTDSSSGS ASEVNSVLRN SDAIESKGST 420 VKLENTQNRK GFVPYKKCLV ERNEESSAAD IEEPERKKLC VGL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019175517.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
TrEMBL | A0A314KU97 | 1e-115 | A0A314KU97_NICAT; Protein reveille 7 | ||||
STRING | XP_009768903.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7447 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 3e-42 | MYB_related family protein |