PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000559.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 115aa    MW: 13213.9 Da    PI: 5.2992
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000559.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB152.39.1e-48496395
                    NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                             e++++lPianv+rimk++lP++akisk+ake +qe +sefisfvt+easdkc++e+rkt+ngdd++wal++lG+++y+e+++ yl+k+
  Itr_sc000559.1_g00009.1  4 EHEKLLPIANVGRIMKQILPEKAKISKEAKERMQESASEFISFVTCEASDKCHKENRKTVNGDDIVWALSSLGLDNYAEAMTRYLHKF 91
                             7899************************************************************************************ PP

                    NF-YB 91 releg 95
                             re e 
  Itr_sc000559.1_g00009.1 92 REYEM 96
                             **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-444110IPR009072Histone-fold
SuperFamilySSF471134.66E-356106IPR009072Histone-fold
PfamPF008085.7E-25972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-173654No hitNo description
PRINTSPR006151.7E-175573No hitNo description
PRINTSPR006151.7E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGDEHEKLLP IANVGRIMKQ ILPEKAKISK EAKERMQESA SEFISFVTCE ASDKCHKENR  60
KTVNGDDIVW ALSSLGLDNY AEAMTRYLHK FREYEMLRAS QTRGPAGEED ETDRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-39493392Transcription factor HapC (Eurofung)
4g92_B8e-39493392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186652.17e-75PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040276e-52NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2G9IB641e-54A0A2G9IB64_9LAMI; Uncharacterized protein
STRINGXP_009760265.11e-54(Nicotiana sylvestris)
STRINGXP_009605488.11e-54(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-54nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]