PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000555.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 142aa    MW: 16081.7 Da    PI: 7.5758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000555.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.4e-054381955
                             HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                              + +L +l+P+     + +K    ++L +A++YIk+L+
  Itr_sc000555.1_g00001.1  4 LYRRLASLVPHeK---SLEKSPAFDVLDHATNYIKQLE 38
                             6789*******55...8899999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-7153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-8156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.102137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MKGLYRRLAS LVPHEKSLEK SPAFDVLDHA TNYIKQLESN VNELKARKDS LQLPVSITVN  60
ESEGGESLEI NIVCGLEKKE VMKMHKVFRI LQEEGAEVVS ATNSIVDLKI YHTIICKAFS  120
PRIGMDTIRV QERLKNFISD LI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181415.14e-78PREDICTED: uncharacterized protein LOC109176442
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.16e-18bHLH family protein