PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000553.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 231aa    MW: 25202.6 Da    PI: 7.666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000553.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08148188954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Itr_sc000553.1_g00011.1 148 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 188
                              699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.078139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14144198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13144197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-12145193No hitNo description
PfamPF000105.6E-6149188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDIELLKSAS SEADQMEMML MMQMDKLPGD GFSGAGDNYS DVNNVQVMDF SSQGIIDSSF  60
MNAALAGSPP AAYNEPPCFP GDSVGRLRGE FSGGSGYPPQ KGSTSMAAMR EMIFRIAAMQ  120
PIHIDPESVK PPKRRNVRIS TDPQSVAARH RRERISEKIR ILQRLVPGGT KMDTASMLDE  180
AIHYVKFLKN QVQSLERAGA SRRPTGIGFP VPVSSTSTYL PTSTTQHYGE P
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575463e-95KP257546.1 Salvia miltiorrhiza clone 114 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156062.11e-135PREDICTED: transcription factor HEC2-like isoform X2
TrEMBLA0A2G9G6X72e-73A0A2G9G6X7_9LAMI; Uncharacterized protein
STRINGVIT_18s0001g10400.t017e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-48bHLH family protein