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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000549.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 737aa MW: 82576.9 Da PI: 5.1618 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 356.9 | 3.1e-109 | 362 | 734 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL++cA+ v+++d + a++ L+++++++sp+gd++qRla +f+++L+arla+++++ly+al+p++ + e+l+a++++ Itr_sc000549.1_g00009.1 362 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPNGDANQRLANVFANGLEARLAGTGTQLYAALAPKRIT---AFEKLKAYQVYMS 444 6789***************************************************************999...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+ k++ aN++I + g+ ++H+iDf+i +G+QWp L+q L+sRp+gpp+lR+Tg++ p++g +e++eetg+rL k++e Itr_sc000549.1_g00009.1 445 ACPFKKIAMTFANKMIHKISMGAPTLHVIDFGILYGFQWPILIQHLSSRPGGPPKLRVTGIDLPQPGfrPAEMIEETGRRLGKYCE 530 ******************************************************************9*9***************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 ++gvpfe+n+++++++e++++e+L++ +gE++aVn+ ++ ++llde+v+++s+rd+vL+l+++++P ++v++ + +++++ F++r Itr_sc000549.1_g00009.1 531 RFGVPFEYNAIATQNWETIKIEDLKLVSGEVVAVNCLYRFKNLLDETVAVDSPRDAVLSLIRKINPSIFVHAVINGSYSAPFFVTR 616 ***********999************************************************************************ PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f eal ++salfd+++a++pr++++r E+e+ gre nv+aceg er+er et+++W+ r ++aGFk +pl+ + +++ + + Itr_sc000549.1_g00009.1 617 FREALFHFSALFDMFDATIPRDDQHRFHFEQEFYGRETLNVIACEGVERVERAETYKQWQVRTMRAGFKLLPLNPELMTKLREKKA 702 *******************************************************************************9988766 PP GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + + + +e+ +++++gWk+r + + +W Itr_sc000549.1_g00009.1 703 AGGyHRDFLFDEDGKWMLQGWKGRIICASACW 734 6655788************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.967 | 336 | 714 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-106 | 362 | 734 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MDPRFTGLPD SVSSFKVEDE FLFSSFQQSQ DFPNNYLDGS LPDFMGVPLI TPSPDSGYFP 60 PPAELDSPDD QDADPVLKYL NQILLEENID EKPSMFHDPI ALKAAEKSFY EALAKGPPSP 120 YQSHVNYNTE SPDSLFGNSC EPSTSSSTFG SSNTDPLWIV EPGESKSSFA SYPPDHSFHS 180 SFETTSERSN GSLDGFGGNM NVQMDSLSNA NVLANIFTDT ESILQFKRGM EEASKFLPAS 240 NQLVIDLDQY SLPPKTEELP RDTVIKAENI ERGSSDNSSR GKKHHHLEDD GFEEERSSKQ 300 SAVYVEEELS ELFDKVLLWN PNECVLTTRP PSEVDKGVPH NVPNSGKSRS KKQGATNEAV 360 DLRTLLISCA QSVAADDRRT ANEQLKQIRQ HSSPNGDANQ RLANVFANGL EARLAGTGTQ 420 LYAALAPKRI TAFEKLKAYQ VYMSACPFKK IAMTFANKMI HKISMGAPTL HVIDFGILYG 480 FQWPILIQHL SSRPGGPPKL RVTGIDLPQP GFRPAEMIEE TGRRLGKYCE RFGVPFEYNA 540 IATQNWETIK IEDLKLVSGE VVAVNCLYRF KNLLDETVAV DSPRDAVLSL IRKINPSIFV 600 HAVINGSYSA PFFVTRFREA LFHFSALFDM FDATIPRDDQ HRFHFEQEFY GRETLNVIAC 660 EGVERVERAE TYKQWQVRTM RAGFKLLPLN PELMTKLREK KAAGGYHRDF LFDEDGKWML 720 QGWKGRIICA SACWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-46 | 347 | 736 | 4 | 380 | Protein SCARECROW |
5b3h_A | 3e-46 | 347 | 736 | 3 | 379 | Protein SCARECROW |
5b3h_D | 3e-46 | 347 | 736 | 3 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199265.1 | 0.0 | PREDICTED: scarecrow-like protein 14 isoform X2 | ||||
Refseq | XP_019199266.1 | 0.0 | PREDICTED: scarecrow-like protein 14 isoform X2 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A484ND69 | 0.0 | A0A484ND69_9ASTE; Uncharacterized protein | ||||
STRING | XP_009606498.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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