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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000549.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 563aa MW: 64185.2 Da PI: 7.2251 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.2 | 7.3e-111 | 186 | 555 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lLle Aea ++ + + a+ L+ +++++sp+gd+ +R a+yf++ L+arla++++ely a++ ++ s +e l+a+++++ Itr_sc000549.1_g00008.1 186 LRSLLLESAEAAANYNGRTASDRLKLIRQHSSPYGDAAERTAHYFANSLEARLAGTGTELYTAFSRRRMS---AAEMLKAYQVYVT 268 6899*********************************************************999999998...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+ k+s++ aN++I + + +++++HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g +e++e tg+rLa++++ Itr_sc000549.1_g00008.1 269 ACPFKKMSNIFANKTIGKLTRKATAIHIIDFGILYGFQWPCFIQGISLRPSGPPKLRITGIDFPQPGfrPAERVEDTGRRLANYCK 354 ******************************************************************9******************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++vpfe+++++akr+++++l+eL+++++E l+Vn+ ++l++++d+ +s+rd+vL+l+k+++P+ +++ + ++ns+ F r Itr_sc000549.1_g00008.1 355 RFNVPFEYTAIAAKRWDSISLDELKTDREELLIVNCLYRLKNTPDD---ENSPRDAVLNLIKQTNPDFFIHGVINGKYNSSFFPSR 437 *****************************************99944...455778******************************* PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f eal ++s+lfd+l+a +pre++er ++Ere+ gr+i+n+vaceg+er+er et+++W+ r ++aGFk+v l+++++k++++ +r Itr_sc000549.1_g00008.1 438 FKEALFHFSSLFDMLDAAIPREDQERLVYEREIWGRDIMNIVACEGSERVERPETYKQWQVRNQRAGFKQVGLNQDVVKEVRAKVR 523 ************************************************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + + v+e+s+++++gWk+r L ++S+W+ Itr_sc000549.1_g00008.1 524 LRYHKDFLVDEHSNWMLQGWKGRVLCALSCWT 555 ***888*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.53 | 160 | 535 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-108 | 186 | 555 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MDHFDSNYNH QFTSTSSSSS SGDLSIESSS CGGDDSTPLE RDYFDGVLKY INQMLMEEED 60 LENRPCMLQD SLALQAAEKS FYEALTDRNF SDERNRKRDS YGDGEGRASK LVAGFTAEES 120 EQTEVYDKTL LCSANNPGFY SDPPWCHLDY SMEQTPRFTP AVTVQSKRGR PRAGEKRVGS 180 GKPVDLRSLL LESAEAAANY NGRTASDRLK LIRQHSSPYG DAAERTAHYF ANSLEARLAG 240 TGTELYTAFS RRRMSAAEML KAYQVYVTAC PFKKMSNIFA NKTIGKLTRK ATAIHIIDFG 300 ILYGFQWPCF IQGISLRPSG PPKLRITGID FPQPGFRPAE RVEDTGRRLA NYCKRFNVPF 360 EYTAIAAKRW DSISLDELKT DREELLIVNC LYRLKNTPDD ENSPRDAVLN LIKQTNPDFF 420 IHGVINGKYN SSFFPSRFKE ALFHFSSLFD MLDAAIPRED QERLVYEREI WGRDIMNIVA 480 CEGSERVERP ETYKQWQVRN QRAGFKQVGL NQDVVKEVRA KVRLRYHKDF LVDEHSNWML 540 QGWKGRVLCA LSCWTPVEKA MTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-47 | 190 | 554 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199023.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
TrEMBL | A0A068V2I6 | 0.0 | A0A068V2I6_COFCA; Uncharacterized protein | ||||
STRING | Migut.D02077.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.1 | 1e-161 | GRAS family protein |