PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000549.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 713aa MW: 80912.9 Da PI: 6.8238

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000549.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355	1.1e-108	313	684	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++lL +cA+a +++d+++ + La +++++s++gd+++Rla++f++A +ar a+++++ly++++ ++ s +e l+a++++ + Itr_sc000549.1_g00007.1 313 TDLLARCAQAEAAHDKKNFDLRLAAIRQHSSQYGDATERLAHCFANAVEARAAGTGTSLYASITRRRMS---AAEYLKAYQTYITA 395 689*******************************************************999888887...9********* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 +P+ ++s++ aN+ I + + ++e++H+iDf+i +G+QWp++++ ++ Rp+gpp+lRiTg++ p++g +e++eetg+rL++fA++ Itr_sc000549.1_g00007.1 396 CPFKRMSNIYANKSIAKLTREAEKIHVIDFGILYGFQWPCIIHGISLRPGGPPRLRITGIDFPQPGfrPAERIEETGRRLENFARR 481 *************************************************************9**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256 ++vpf++++ +ak++e+++le+L+++++E l+ n+ +++++++de+v ++ +rd+vLkl+k+++P+ +v+ + +n++ F +r Itr_sc000549.1_g00007.1 482 FNVPFQYTA-IAKKWETITLEDLKIEKDEILVANCLYRMKNVPDETVMANNsPRDDVLKLIKKINPEFFVHGIVNGMYNAPFFTTR 566 *****.7*******************************998888****************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f ea ++salfd++ea++pre+e r+ E+ellgr++ nv+aceg+er+er et+++W++r ++aGF+++pl ++ k++k+ r Itr_sc000549.1_g00007.1 567 FREAYFHFSALFDMFEATMPREDEGRMLAEQELLGRDVLNVIACEGSERVERPETYKQWQMRTQRAGFRALPLHREIIKEVKAKTR 652 ********************************************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + + ++vee+ +++++ Wk+r ++++S W+ Itr_sc000549.1_g00007.1 653 MGYHRDFSVEEDGEWMLQSWKGRVIYAMSLWQ 684 999************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.696	286	664	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-106	313	684	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MGTLFRAHHN SRDESEFNHH YSVPTSGGLD RNLVLNEGCS DVLGFSGMKS VHDGPAPSEG 60 VEGDYFDGVF KYIQNMLMEE DDLEHIPYMF QDCMALQAAE KSFYDALTEN PPPPPPPNHR 120 NCSDSGNINA QFSVSDNQVG SEPFPAQFPL PGNQTFQSGL QELQPGYNPF PGQVENPMIP 180 MNNSSGSMFS TQFSGESGTY LIGNGCSGNG EQSNGNGPER RRNRNRENGG EGQRSKHIAT 240 GNSDQEPEKT EKYDKALLCP SMNPLFYDDS IPYLSDESSE TEARDKKYLQ GPKRGRPRGS 300 KKGAKPKQIV DLTDLLARCA QAEAAHDKKN FDLRLAAIRQ HSSQYGDATE RLAHCFANAV 360 EARAAGTGTS LYASITRRRM SAAEYLKAYQ TYITACPFKR MSNIYANKSI AKLTREAEKI 420 HVIDFGILYG FQWPCIIHGI SLRPGGPPRL RITGIDFPQP GFRPAERIEE TGRRLENFAR 480 RFNVPFQYTA IAKKWETITL EDLKIEKDEI LVANCLYRMK NVPDETVMAN NSPRDDVLKL 540 IKKINPEFFV HGIVNGMYNA PFFTTRFREA YFHFSALFDM FEATMPREDE GRMLAEQELL 600 GRDVLNVIAC EGSERVERPE TYKQWQMRTQ RAGFRALPLH REIIKEVKAK TRMGYHRDFS 660 VEEDGEWMLQ SWKGRVIYAM SLWQPLHNXG EWMLQSWKGR VIYAMSLWQP LHN

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MGTLFRAHHN SRDESEFNHH YSVPTSGGLD RNLVLNEGCS DVLGFSGMKS VHDGPAPSEG  60
VEGDYFDGVF KYIQNMLMEE DDLEHIPYMF QDCMALQAAE KSFYDALTEN PPPPPPPNHR  120
NCSDSGNINA QFSVSDNQVG SEPFPAQFPL PGNQTFQSGL QELQPGYNPF PGQVENPMIP  180
MNNSSGSMFS TQFSGESGTY LIGNGCSGNG EQSNGNGPER RRNRNRENGG EGQRSKHIAT  240
GNSDQEPEKT EKYDKALLCP SMNPLFYDDS IPYLSDESSE TEARDKKYLQ GPKRGRPRGS  300
KKGAKPKQIV DLTDLLARCA QAEAAHDKKN FDLRLAAIRQ HSSQYGDATE RLAHCFANAV  360
EARAAGTGTS LYASITRRRM SAAEYLKAYQ TYITACPFKR MSNIYANKSI AKLTREAEKI  420
HVIDFGILYG FQWPCIIHGI SLRPGGPPRL RITGIDFPQP GFRPAERIEE TGRRLENFAR  480
RFNVPFQYTA IAKKWETITL EDLKIEKDEI LVANCLYRMK NVPDETVMAN NSPRDDVLKL  540
IKKINPEFFV HGIVNGMYNA PFFTTRFREA YFHFSALFDM FEATMPREDE GRMLAEQELL  600
GRDVLNVIAC EGSERVERPE TYKQWQMRTQ RAGFRALPLH REIIKEVKAK TRMGYHRDFS  660
VEEDGEWMLQ SWKGRVIYAM SLWQPLHNXG EWMLQSWKGR VIYAMSLWQP LHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-46	318	685	24	379	Protein SCARECROW
5b3h_D	7e-46	318	685	24	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198996.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	A0A484NQV5	0.0	A0A484NQV5_9ASTE; Uncharacterized protein
STRING	PGSC0003DMT400078286	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-167	GRAS family protein