PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 630aa MW: 71076.9 Da PI: 6.0909

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000549.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.4	7.6e-112	257	627	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + lL++cA+a++s d++ ++++L+++++++sp+g+ +R+a+y+++AL+arl+++++ ly + +ps+ s ++ l+a++++ + Itr_sc000549.1_g00006.1 257 RGLLTQCAQAMASYDTRTVTQILKKIRDHSSPQGNGHERMAFYLANALEARLNGTGTALYISNSPSNIS---AADILKAYQMYITA 339 679*************************************************999999877777777...9********* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 sP+ k+s++ aN+ I + ++g+ r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++++tg+rL +++++ Itr_sc000549.1_g00006.1 340 SPFKKVSNMFANKYIRKVAAGAPRLHIIDFGILYGFQWPCLIQGLSTRPGGPPRLRITGIDFPQPGfrPAERVKATGRRLDNYCKR 425 *************************************************************9**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 ++vpfef++ +a+++++++le+L+++++++l+Vn+ +l +++de+v +s+rd vL+l+k+++P+v+++ + +n++ F++rf Itr_sc000549.1_g00006.1 426 FHVPFEFKA-IAQKWDTIKLEDLEIDRDDVLVVNCLDRLGNVPDETVVPNSPRDIVLDLIKKINPDVFIHGVVNGTYNTPFFVTRF 510 *****.7*********************************************************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 eal ++s+lfd +ea++pre+++r+ E++++gr+++nv+aceg+er+er et+++W+ r +aGF+++pl+++++k +k ++ Itr_sc000549.1_g00006.1 511 REALFHFSSLFDIFEATVPREDKDRQLFEEMVFGRDAMNVIACEGSERVERPETYKQWQVRSLRAGFQQLPLDQEITKCVKDKVKS 596 *********************************************************************************9 PP GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + ++++e+ ++l++gWk+r L +vS+W+ Itr_sc000549.1_g00006.1 597 EYHKDFSIDEDGNWLLQGWKGRVLHAVSCWK 627 99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.688	230	607	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-109	257	627	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MEALVQELFT TPNDFVYNHH SKPVNPSGQR FNLVERSAGE GEEGDYSDAI LKYINQMLME 60 EEDLENQPCM FRDCMALHAT EKYFSDVLNG SGDNSPLSIP QYDASFAGSS PSNCSSDLNN 120 GDSDLSPQFQ SSFNGSLFSQ YASRGAAIGL PNDSNVLSNL DMEVKESEGE NSPSKGKRNH 180 YYYSSDDGSA ETQRSNKHLA SYAPADEPEP LDMYDDVLLC SNKKNSKTEL QQKGQSKGGR 240 NRQGKKKEIQ KEFVDLRGLL TQCAQAMASY DTRTVTQILK KIRDHSSPQG NGHERMAFYL 300 ANALEARLNG TGTALYISNS PSNISAADIL KAYQMYITAS PFKKVSNMFA NKYIRKVAAG 360 APRLHIIDFG ILYGFQWPCL IQGLSTRPGG PPRLRITGID FPQPGFRPAE RVKATGRRLD 420 NYCKRFHVPF EFKAIAQKWD TIKLEDLEID RDDVLVVNCL DRLGNVPDET VVPNSPRDIV 480 LDLIKKINPD VFIHGVVNGT YNTPFFVTRF REALFHFSSL FDIFEATVPR EDKDRQLFEE 540 MVFGRDAMNV IACEGSERVE RPETYKQWQV RSLRAGFQQL PLDQEITKCV KDKVKSEYHK 600 DFSIDEDGNW LLQGWKGRVL HAVSCWKPIN

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MEALVQELFT TPNDFVYNHH SKPVNPSGQR FNLVERSAGE GEEGDYSDAI LKYINQMLME  60
EEDLENQPCM FRDCMALHAT EKYFSDVLNG SGDNSPLSIP QYDASFAGSS PSNCSSDLNN  120
GDSDLSPQFQ SSFNGSLFSQ YASRGAAIGL PNDSNVLSNL DMEVKESEGE NSPSKGKRNH  180
YYYSSDDGSA ETQRSNKHLA SYAPADEPEP LDMYDDVLLC SNKKNSKTEL QQKGQSKGGR  240
NRQGKKKEIQ KEFVDLRGLL TQCAQAMASY DTRTVTQILK KIRDHSSPQG NGHERMAFYL  300
ANALEARLNG TGTALYISNS PSNISAADIL KAYQMYITAS PFKKVSNMFA NKYIRKVAAG  360
APRLHIIDFG ILYGFQWPCL IQGLSTRPGG PPRLRITGID FPQPGFRPAE RVKATGRRLD  420
NYCKRFHVPF EFKAIAQKWD TIKLEDLEID RDDVLVVNCL DRLGNVPDET VVPNSPRDIV  480
LDLIKKINPD VFIHGVVNGT YNTPFFVTRF REALFHFSSL FDIFEATVPR EDKDRQLFEE  540
MVFGRDAMNV IACEGSERVE RPETYKQWQV RSLRAGFQQL PLDQEITKCV KDKVKSEYHK  600
DFSIDEDGNW LLQGWKGRVL HAVSCWKPIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-45	260	627	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199217.1	0.0	PREDICTED: scarecrow-like protein 30
Swissprot	O80933	1e-168	SCL9_ARATH; Scarecrow-like protein 9
Swissprot	Q9XE58	1e-168	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2G3AXQ4	0.0	A0A2G3AXQ4_CAPCH; Uncharacterized protein
STRING	Solyc01g100200.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-170	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]