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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Itr_sc000544.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family |
LBD |
Protein Properties |
Length: 268aa MW: 29555 Da PI: 7.2018 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Itr_sc000544.1_g00006.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 125.8 | 2.1e-39 | 56 | 157 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C aCk+lrrkC+++C++apyf p+e +++fa++hk+FGasnv+kll+++p ++r+da+ s+ yeAear++dP+yG+v++il+l+q
Itr_sc000544.1_g00006.1 56 PCGACKLLRRKCVPECIFAPYFdPNEGTARFAAIHKVFGASNVSKLLTHIPMDRRPDAAISISYEAEARMSDPIYGCVSTILSLKQ 141
7*********************666669********************************************************** PP
DUF260 86 qleqlkaelallkeel 101
q+++l+aela++k+++
Itr_sc000544.1_g00006.1 142 QVASLEAELAMVKTQI 157
***********99885 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MDSSHNFNSS PSINSGVLNT GAYPQGGGAS SSTAAPRRNY TARRAALESG AAARGPCGAC 60 KLLRRKCVPE CIFAPYFDPN EGTARFAAIH KVFGASNVSK LLTHIPMDRR PDAAISISYE 120 AEARMSDPIY GCVSTILSLK QQVASLEAEL AMVKTQIMIS RFAAENNFLL QTPQQQQQLQ 180 QQQQQQQQQD QNAAIIMEQQ QPVYFNTSFD SNSLLNLTNF TTNYNYIGEA TPPNTQSFGP 240 NFQPPHPPLP DQEHSHYCPV HFTNHMFP
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