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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000543.1_g00010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
NAC |
| Protein Properties |
Length: 337aa MW: 37582.1 Da PI: 8.3998 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000543.1_g00010.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.1 | 1.4e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrF Ptdeel+v+yL++kv+g++++l ++i ++d+yk++PwdLp++++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkat
Itr_sc000543.1_g00010.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIGDIDLYKFDPWDLPSRANFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKAT 98
79***************************9.89***************99999********************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Itr_sc000543.1_g00010.1 99 GTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
****9999.999****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MGVKDMDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIGDID LYKFDPWDLP 60
SRANFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKIITTEGRK VGIKKALVFY 120
VGKAPKGTKT NWIMHEYRLC EAPRKTGSAR LDEWVLCRIY KKNSSAAAAG AQKPVSGVQS 180
KDYSHGSSSS SSSQFDDMLE SLPEINDQYF SLPRINSLKN LNLQQDDKSS ILRLNSGSFD 240
WATLAGINSI PELGPGNQIP QSGHLNHANP ADIYGGHSMA LSFPVDDEAQ SGIRVENNSG 300
IYQPQNPNAF THNFSNLLDP YGIRYANQPG SLAFRQQ
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-104 | 1 | 166 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-104 | 1 | 166 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-104 | 1 | 166 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-104 | 1 | 166 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-104 | 1 | 166 | 4 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 1e-104 | 1 | 166 | 4 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
