PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000540.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 27234.5 Da PI: 5.6698 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.6 | 4.3e-20 | 3 | 46 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i+nks +vtfskRr+g++KKA+ LS+LC+a+va+iifs+ g+ Itr_sc000540.1_g00001.1 3 KIQNKSSLEVTFSKRRAGLFKKASMLSTLCGADVAIIIFSPAGN 46 599**************************************984 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-19 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.32 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-20 | 2 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-21 | 3 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-6 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-6 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVKIQNKSSL EVTFSKRRAG LFKKASMLST LCGADVAIII FSPAGNKVFS FGHPTVEAVV 60 ERFLRENNPE PVNETGGGAL AMEQIIEAQR NARVQELNME LTRLEAIFEL EKKRGEAIDG 120 VVEANREAHG WMRGSYDDIS FEQLVTLKSG MENLMKEIQQ KAHDQLMAVH GNGTPFNPYA 180 SGVFSNGNMV SGDPTSEFNF GTSGGAPGAH PSTSGGTAAT SAFPGSSSMA SGNNAGSPCA 240 AGTSSDACGN FGAGRPFF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196307.1 | 1e-101 | PREDICTED: agamous-like MADS-box protein AGL62 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-41 | AGAMOUS-like 62 |