PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000539.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 338aa    MW: 38937.8 Da    PI: 4.5222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000539.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.13.1e-1861324128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratk..sgyWk 84 
                              G rF+P+d el++  L+  v g  ++  + i++ d+y + ePw++  + + +ek+ yfF++ ++k++  +g+r nr++   +g+W+
  Itr_sc000539.1_g00012.1   6 GDRFQPKDYELLTILLRF-VIGMGCHR-TNIRHEDLYgEKEPWEIF-RWDCNEKHQYFFTQLKRKSKsmKGSRINRTVGksAGTWH 88 
                              88**********776655.55555555.469999999346*****5.77778999****9988877644799****7554589*** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               + k k+++++ +g+  g k+++ + ++ +p+ +  +W+++e+ l
  Itr_sc000539.1_g00012.1  89 GQDKGKPIIDQkTGARLGYKRSFLYQNKMEPE-QDRQWLLKEFYL 132
                              *********9867788*******999877777.899******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.5933161IPR003441NAC domain
SuperFamilySSF1019411.09E-195161IPR003441NAC domain
PfamPF023651.5E-106131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEKELGDRFQ PKDYELLTIL LRFVIGMGCH RTNIRHEDLY GEKEPWEIFR WDCNEKHQYF  60
FTQLKRKSKS MKGSRINRTV GKSAGTWHGQ DKGKPIIDQK TGARLGYKRS FLYQNKMEPE  120
QDRQWLLKEF YLNDEAIMKA TETYPKLEDT KDFVLCRLKR KKRAGGEPLE IKDVPVETIV  180
QILLHGAADS TATLPTIEEN FDNHCYMDPT VTPTATLPTT EENFDNNYYI NPTEEILAQV  240
EPQPSVLGEN NGGEQSIQGE NNGGDDMSLY FDCNILNEDP EMLAMQQRWL EGNNDICIDD  300
LTGPSLEEIL QELAAAPLPQ PSMQASEKDD YTTVFYPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179039.15e-61PREDICTED: uncharacterized protein LOC109174249
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.27e-14NAC domain containing protein 80