PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000529.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 1062aa    MW: 117456 Da    PI: 6.8173
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000529.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22265363193
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++ +r++++r++lt+GW+ Fv+a++L +gD 
  Itr_sc000529.1_g00016.1 265 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIAKDLHGNEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDA 348
                              99*****************************8544444..48******************************************** PP

                              EEEEE-SS.SEE..E CS
                       B3  80 vvFkldgr.sefelv 93 
                              v+F  + +  +fe +
  Itr_sc000529.1_g00016.1 349 VIFICVFTsLKFEHH 363
                              ***866544555555 PP
2Auxin_resp1201.8e-39412495183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+++YnPras+s+Fv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Itr_sc000529.1_g00016.1 412 AAHAAATNSRFTIFYNPRASPSDFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 495
                              79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43250415IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-38258401IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-21264360No hitNo description
PfamPF023621.4E-20265361IPR003340B3 DNA binding domain
SMARTSM010191.2E-18265372IPR003340B3 DNA binding domain
PROSITE profilePS5086311.617265388IPR003340B3 DNA binding domain
PfamPF065072.6E-34412495IPR010525Auxin response factor
SuperFamilySSF542771.18E-79181000No hitNo description
PfamPF023092.2E-69191008IPR033389AUX/IAA domain
PROSITE profilePS5174524.1199261011IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MDRVLQAAKS NLSKFGVSVR EAADFVSRST IITVTGYQPT FEICSCVASL SSTSGKGNSR  60
GLNRAGVVAE RIWSSKNEAD EEEGGGVWLR EWVAYSYTKK RQTHPGGFVV GTRSSSLAAQ  120
SFPGMRVSLA GVNPQPEEGT GEKKCLNSEL WHACAGPLVS LPPVGSRVVY FPQGHSEQVT  180
ASTNKEIDAH IPSYPGLPPQ LICQLHNVTM HGGGNVRIWE LQADNETDEV YAQMTLQPLS  240
AQEQKDVCLL PAELGMPSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYSQQP  300
PAQELIAKDL HGNEWKFRHV FRGQPKRHLL TTGWSVFVSA KRLVAGDAVI FICVFTSLKF  360
EHHVTLQKLL SSVRNENNQL LLGIRRANRP QTVMPSSVLS SDSMHIGLLA AAAHAAATNS  420
RFTIFYNPRA SPSDFVIPLA KYAKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGISD  480
LDPVRWPNSH WRSVKAELMD LESAFLHNSL ISQVGWDEST AGERQPRVSL WEIEPLTTFP  540
MYPSPFSLRL KRPWPSGLPS FPGLSNGDMH ISSPLSWLRG NMGDQGIQSL NFQGFGITPF  600
MQPRLDASML GLQPDIYQTM ATLDSSKLAS QQSLLQFQQS IPSSSSSLIQ SQMLQRPHPQ  660
QNLLQSFQEN QVISQAQILQ QQLQRQQSYN EQQQQQLHPP PIQQFQEQQQ MSKPISSLPR  720
MNSTTQSQLS HFQALSSTVP QQSFSDLVGN HVMTSNNSST QSLPRSFSHD EASQLLNMHE  780
TNPLATLPSK RIALESQVSS RATPYAVSQA DMISPNSKVS DLPTFLPPFP GKEFPEYQGA  840
AYSQSNNALL GVNTDSSLLL QNGISNLKNS GGENGFLNMP FSTCNFTSGV GSDYPLNPDM  900
GTSSCVDESG FLQSSENVDQ ANPPNRTFVK VHKSGSFGRS LDISKFSSYH ELRSELARMF  960
GLEGLLEDPE RSGWQLVFVD RENDVLLLGD DPWQEFVNNV WYIKILSPFE VHQMGKEEGL  1020
DIPNNLPAAN QRLPNGGSSC EVHVSQKETR NMNGIPLGSL DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-14814253447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2168640.0EF216864.2 Ipomoea nil auxin response factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152600.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1J6IHI70.0A0A1J6IHI7_NICAT; Auxin response factor
STRINGXP_009602213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]