PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000514.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 511aa MW: 58250.1 Da PI: 7.834

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000514.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88	1.1e-27	42	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++e+laL+++r++me ++r+++ k plW+evs+km e g++r++k+Ckek+en+ k++k++keg+++r ++ +++++ Itr_sc000514.1_g00005.1 42 RWPHEETLALLNIRSQMELAFRDSSsssssHKVPLWDEVSRKMGELGYHRNAKKCKEKFENIYKYHKRTKEGRSGR-RQNAKNYRF 126 8*******************853334449***************************************98.67778 PP trihelix 82 fdqle 86 f+qle Itr_sc000514.1_g00005.1 127 FQQLE 131 *97 PP
2	trihelix	102	4.5e-32	368	452	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi++rr+++ +++++ +k+plWee+s+ m++ g+ rs+k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ l+ Itr_sc000514.1_g00005.1 368 RWPREEVEALIRVRRNLDLQYQDNGSKGPLWEEISAGMKKVGYDRSAKRCKEKWENINKYYRRVKETQKKR-PEDSKTCPYFHLLD 452 8*******************************************************************8.99*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0012	39	106	IPR001005	SANT/Myb domain
Pfam	PF13837	5.5E-18	41	131	No hit	No description
CDD	cd12203	3.77E-20	41	111	No hit	No description
PROSITE profile	PS50090	6.481	41	104	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.968	361	425	IPR017877	Myb-like domain
SMART	SM00717	7.9E-4	365	427	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-4	366	424	IPR009057	Homeodomain-like
Pfam	PF13837	4.0E-23	367	454	No hit	No description
CDD	cd12203	2.70E-25	367	432	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MLETPVLLQN SSDEGGGAAA AAAAELKKNN EGGGEWNSGG NRWPHEETLA LLNIRSQMEL 60 AFRDSSSSSS SHKVPLWDEV SRKMGELGYH RNAKKCKEKF ENIYKYHKRT KEGRSGRRQN 120 AKNYRFFQQL ELFDSHHSLL PSPTSHQIQI QIQNTLEKPT LVSPATPLTM LKPTTSLSQD 180 DLRIQQPCHT RGDFSLDVNS TTSSSSGKES QGIAKRKRKL GDYFDKLMKE VLEKQEGLHS 240 KFLEAIEKCD KDRMAREEAW KRQEMERLKR EQESIAQERA IAAAKDAAII AFLQKITQQP 300 IPVPLPTNPT PISPKCVENQ ESVLEKNIGD GSEEDVVEKG NVAERSSIEK REKGGCGESN 360 SVQTSSSRWP REEVEALIRV RRNLDLQYQD NGSKGPLWEE ISAGMKKVGY DRSAKRCKEK 420 WENINKYYRR VKETQKKRPE DSKTCPYFHL LDSLYQSKSR RVEHRGSDVP KSKGEMLVQI 480 MRQNQEEEEE ATGKEDGERP SVDQNEENDD E

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MLETPVLLQN SSDEGGGAAA AAAAELKKNN EGGGEWNSGG NRWPHEETLA LLNIRSQMEL  60
AFRDSSSSSS SHKVPLWDEV SRKMGELGYH RNAKKCKEKF ENIYKYHKRT KEGRSGRRQN  120
AKNYRFFQQL ELFDSHHSLL PSPTSHQIQI QIQNTLEKPT LVSPATPLTM LKPTTSLSQD  180
DLRIQQPCHT RGDFSLDVNS TTSSSSGKES QGIAKRKRKL GDYFDKLMKE VLEKQEGLHS  240
KFLEAIEKCD KDRMAREEAW KRQEMERLKR EQESIAQERA IAAAKDAAII AFLQKITQQP  300
IPVPLPTNPT PISPKCVENQ ESVLEKNIGD GSEEDVVEKG NVAERSSIEK REKGGCGESN  360
SVQTSSSRWP REEVEALIRV RRNLDLQYQD NGSKGPLWEE ISAGMKKVGY DRSAKRCKEK  420
WENINKYYRR VKETQKKRPE DSKTCPYFHL LDSLYQSKSR RVEHRGSDVP KSKGEMLVQI  480
MRQNQEEEEE ATGKEDGERP SVDQNEENDD E

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199807.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-117	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	M0ZXI1	1e-170	M0ZXI1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400010112	1e-171	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9794	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-101	Trihelix family protein