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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000510.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 533aa MW: 60565.2 Da PI: 8.4064 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 11 | 100 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffkvl ++d + +l+lp f++++ ++ +e+ ++le esg+sW vk+ + ++ +t+GW eF+k+ +L+ Df+vF ++ Itr_sc000510.1_g00003.1 11 FFKVL-NEDFS--TLLRLPLLFTANYgKHLPEN--PVVLEIESGESWPVKI--EEDEEHQCFTQGWPEFAKDLRLELHDFLVFWFK 89 77888.33333..359*******9995434444..5***************..999999************************998 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 s+f +v v+ Itr_sc000510.1_g00003.1 90 CPSKF--LVEVYG 100 87777..887765 PP | |||||||
2 | B3 | 50.5 | 3.7e-16 | 158 | 237 | 10 | 89 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++rl++p f++e g +s+ ++l+d+ g +W v ++ + +++r +tkGWkeF an+L +gD+++F+++++ + Itr_sc000510.1_g00003.1 158 YSNKSRLRIPTGFMRETGRM--GSMCVVLRDPVGMEWPVLISRhgKSHKDRSDMTKGWKEFKAANDLVDGDVCTFTHTETPG 237 456789***********854..8999***************776766667799***********************876433 PP | |||||||
3 | B3 | 42.2 | 1.5e-13 | 246 | 322 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f+++hg + +k le ++g++ ++ + + ++gr++l+kGW+eF k ++eg f+vF++dg+s f +v +f+k Itr_sc000510.1_g00003.1 246 FPLEFVRRHGRN--LPKVACLEVPTGKVSKIHV-VHDSQGRIWLAKGWEEFTKNYSIREGHFLVFRYDGESHF--HVLIFDK 322 799******977..8899*********999999.4566678****************************9999..*****98 PP | |||||||
4 | B3 | 54.4 | 2.3e-17 | 436 | 514 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +v+ ps+v++++rl +p fa++h +++ +s + +l + grsW k+ ++++++ + GWk F+ +n+Lk+gD+++++ ++ Itr_sc000510.1_g00003.1 436 SVMYPSYVSSENRLNIPLAFAKKHFLDQ-SSNDFMLVS-GGRSWPAKC--TRNGQHARIY-GWKAFAVDNKLKVGDVCILEIMK 514 6899********************8884.455777666.9********..9999988888.*******************9654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-16 | 6 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-17 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.533 | 8 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-13 | 9 | 99 | No hit | No description |
Pfam | PF02362 | 1.5E-10 | 11 | 97 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-12 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-17 | 146 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-19 | 148 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.76 | 149 | 247 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.20E-14 | 150 | 237 | No hit | No description |
SMART | SM01019 | 2.0E-8 | 152 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-13 | 158 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-9 | 240 | 323 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.33E-18 | 243 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-10 | 245 | 322 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.47E-14 | 245 | 321 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-18 | 245 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.827 | 249 | 323 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-21 | 426 | 519 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-18 | 427 | 520 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.589 | 434 | 529 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-10 | 435 | 529 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 436 | 515 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-17 | 437 | 511 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MAEPPERRPS FFKVLNEDFS TLLRLPLLFT ANYGKHLPEN PVVLEIESGE SWPVKIEEDE 60 EHQCFTQGWP EFAKDLRLEL HDFLVFWFKC PSKFLVEVYG KTGPAKIFNP PIKGKVSPKI 120 ERNDVSADAA AAAAASDDDG VTEKKKKSRP CFSVDMKYSN KSRLRIPTGF MRETGRMGSM 180 CVVLRDPVGM EWPVLISRHG KSHKDRSDMT KGWKEFKAAN DLVDGDVCTF THTETPGAWV 240 LQVQRFPLEF VRRHGRNLPK VACLEVPTGK VSKIHVVHDS QGRIWLAKGW EEFTKNYSIR 300 EGHFLVFRYD GESHFHVLIF DKTASEIEYP QIIVSHGGVE SLEDLAQKCG PNKRKRQEDQ 360 RFHHEIPSSD HQPKKTSAVT AVRVKVENSS DDEDSSPPLM TPKISTGEKQ SLVKTEMGAA 420 YERAKAFKSK NPFHISVMYP SYVSSENRLN IPLAFAKKHF LDQSSNDFML VSGGRSWPAK 480 CTRNGQHARI YGWKAFAVDN KLKVGDVCIL EIMKCQKLTI INIIVFHADE IDD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195010.1 | 1e-152 | PREDICTED: B3 domain-containing protein Os12g0591400-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-27 | B3 family protein |