 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000510.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
B3 |
| Protein Properties |
Length: 284aa MW: 32280.7 Da PI: 7.8858 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000510.1_g00002.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 42.7 | 1e-13 | 4 | 80 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+p +f+++hg + +k le ++g++ ++ +i ++gr++l+kGW+eF k ++eg f+vF++dg+s f +v +f+k
Itr_sc000510.1_g00002.1 4 FPLEFVRRHGRN--LPKVACLEVPTGEVSKIHVI-HDSQGRIWLAKGWEEFTKNYSIREGHFLVFRYDGESHF--HVLIFDK 80
799******977..8899***************6.5555789***************************9999..*****98 PP
|
| 2 | B3 | 49.6 | 7.4e-16 | 189 | 275 | 5 | 95 |
-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 5 ltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
++ps v++ grl++p +fa++h g + ++ + + + grsW k+ +++ r + +GWk F+ +n+Lk+gD+++++ +++
Itr_sc000510.1_g00002.1 189 MSPSFVSSGnGRLYIPLSFAKKHflG-Q--STNDFV-LVSGGRSWPAKCALSRNCAR--I-NGWKAFAVDNKLKVGDVCILEIMKS 267
55555555449************633.3..223455.4569********88888877..4.5********************8876 PP
SEE..EEE CS
B3 88 sefelvvk 95
+e + ++
Itr_sc000510.1_g00002.1 268 KELTVNII 275
66655554 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MQRFPLEFVR RHGRNLPKVA CLEVPTGEVS KIHVIHDSQG RIWLAKGWEE FTKNYSIREG 60
HFLVFRYDGE SHFHVLIFDK TASEIEYPQI IVSHGGVESL EDLSQKCGPN KRKRQEDDQT 120
ESFCNRFNHV RVKVEISPDD EDEDSPPLMT PKISTGEKQS LVKTAEMDYS AYQRAKAFKS 180
KNPFHISVMS PSFVSSGNGR LYIPLSFAKK HFLGQSTNDF VLVSGGRSWP AKCALSRNCA 240
RINGWKAFAV DNKLKVGDVC ILEIMKSKEL TVNIIVFPAD EIDD
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 3e-14 | 164 | 281 | 28 | 144 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 3e-14 | 164 | 281 | 28 | 144 | B3 domain-containing transcription factor VRN1 |
