PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000510.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 284aa MW: 32280.7 Da PI: 7.8858

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000510.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.7	1e-13	4	80	18	99
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f+++hg + +k le ++g++ ++ +i ++gr++l+kGW+eF k ++eg f+vF++dg+s f +v +f+k Itr_sc000510.1_g00002.1 4 FPLEFVRRHGRN--LPKVACLEVPTGEVSKIHVI-HDSQGRIWLAKGWEEFTKNYSIREGHFLVFRYDGESHF--HVLIFDK 80 799****977..8899***********6.5555789***********************9999..***98 PP
2	B3	49.6	7.4e-16	189	275	5	95
-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ps v++ grl++p +fa++h g + ++ + + + grsW k+ +++ r + +GWk F+ +n+Lk+gD+++++ +++ Itr_sc000510.1_g00002.1 189 MSPSFVSSGnGRLYIPLSFAKKHflG-Q--STNDFV-LVSGGRSWPAKCALSRNCAR--I-NGWKAFAVDNKLKVGDVCILEIMKS 267 55555555449**********633.3..223455.4569****88888877..4.5******************8876 PP SEE..EEE CS B3 88 sefelvvk 95 +e + ++ Itr_sc000510.1_g00002.1 268 KELTVNII 275 66655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.3E-7	1	81	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.787	1	81	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-10	3	80	IPR003340	B3 DNA binding domain
CDD	cd10017	7.47E-15	3	79	No hit	No description
SuperFamily	SSF101936	1.73E-18	3	81	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.9E-18	3	81	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.2E-21	177	275	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-20	178	275	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.1E-14	184	280	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.997	186	280	IPR003340	B3 DNA binding domain
CDD	cd10017	1.63E-18	188	275	No hit	No description
Pfam	PF02362	7.3E-15	189	275	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MQRFPLEFVR RHGRNLPKVA CLEVPTGEVS KIHVIHDSQG RIWLAKGWEE FTKNYSIREG 60 HFLVFRYDGE SHFHVLIFDK TASEIEYPQI IVSHGGVESL EDLSQKCGPN KRKRQEDDQT 120 ESFCNRFNHV RVKVEISPDD EDEDSPPLMT PKISTGEKQS LVKTAEMDYS AYQRAKAFKS 180 KNPFHISVMS PSFVSSGNGR LYIPLSFAKK HFLGQSTNDF VLVSGGRSWP AKCALSRNCA 240 RINGWKAFAV DNKLKVGDVC ILEIMKSKEL TVNIIVFPAD EIDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	3e-14	164	281	28	144	B3 domain-containing transcription factor VRN1
4i1k_B	3e-14	164	281	28	144	B3 domain-containing transcription factor VRN1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195010.1	1e-166	PREDICTED: B3 domain-containing protein Os12g0591400-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA759	18	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-28	B3 family protein