PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000505.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Trihelix | ||||||||
Protein Properties | Length: 437aa MW: 49436.4 Da PI: 4.9567 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.3 | 1.5e-21 | 118 | 214 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +Wt++ v++Li+++ ++++++ + +kk++W+ +sk m ++g+++sp+qC++k+++lnkrykk++++ +++ ++ Itr_sc000505.1_g00001.1 118 KWTNSIVRLLIQVVAYVGDDVCLEGpeglkrksgciQKKGKWKTISKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCA 203 7**************999998843224556677889**********************************************5689 PP trihelix 75 ssstcpyfdql 85 ++++ ++ d++ Itr_sc000505.1_g00001.1 204 VVENPALMDSM 214 99988888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-18 | 116 | 241 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MSSSGLGNGF LSGYSGGFLG MNTQQPQLNG NDVGNNRHDR MQSSMDLKLE LENGKRIELL 60 ERKGPAQKGF TMSFGKDKRV FCNNDMSDED EPSLAEDGNG ENEDEAPGKK GSQWQRMKWT 120 NSIVRLLIQV VAYVGDDVCL EGPEGLKRKS GCIQKKGKWK TISKIMISKG CHVSPQQCED 180 KFNDLNKRYK KLNDILGRGT SCAVVENPAL MDSMPQLSAK AKDTVKKILC SKHLFYREMC 240 AYHNGQKIPD CSDLELQIHS SSVATQCSKD NNGCPGDEAE ENDDSVDDES GDEENNTASG 300 DAVKTGTCYE RTENEGNVNL SQSIDNDSFG VEIDEFFQDP TKSQWERKVW IKKRMLQLEE 360 ERVGIEEEAV ELEKRRFKWQ RFCSEKDREL EIERLENERL VLENKRMVLQ LKHKEHELDL 420 PTPCVPFKSG PLSLDRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163696.1 | 0.0 | PREDICTED: uncharacterized protein LOC109160043 | ||||
Refseq | XP_019163697.1 | 0.0 | PREDICTED: uncharacterized protein LOC109160043 | ||||
TrEMBL | A0A1S3ZW13 | 0.0 | A0A1S3ZW13_TOBAC; uncharacterized protein LOC107791041 | ||||
STRING | XP_009768464.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12913 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 5e-65 | sequence-specific DNA binding transcription factors |