PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000505.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 437aa MW: 49436.4 Da PI: 4.9567

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000505.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.3	1.5e-21	118	214	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +Wt++ v++Li+++ ++++++ + +kk++W+ +sk m ++g+++sp+qC++k+++lnkrykk++++ +++ ++ Itr_sc000505.1_g00001.1 118 KWTNSIVRLLIQVVAYVGDDVCLEGpeglkrksgciQKKGKWKTISKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCA 203 7************999998843224556677889********************************************5689 PP trihelix 75 ssstcpyfdql 85 ++++ ++ d++ Itr_sc000505.1_g00001.1 204 VVENPALMDSM 214 99988888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-18	116	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MSSSGLGNGF LSGYSGGFLG MNTQQPQLNG NDVGNNRHDR MQSSMDLKLE LENGKRIELL 60 ERKGPAQKGF TMSFGKDKRV FCNNDMSDED EPSLAEDGNG ENEDEAPGKK GSQWQRMKWT 120 NSIVRLLIQV VAYVGDDVCL EGPEGLKRKS GCIQKKGKWK TISKIMISKG CHVSPQQCED 180 KFNDLNKRYK KLNDILGRGT SCAVVENPAL MDSMPQLSAK AKDTVKKILC SKHLFYREMC 240 AYHNGQKIPD CSDLELQIHS SSVATQCSKD NNGCPGDEAE ENDDSVDDES GDEENNTASG 300 DAVKTGTCYE RTENEGNVNL SQSIDNDSFG VEIDEFFQDP TKSQWERKVW IKKRMLQLEE 360 ERVGIEEEAV ELEKRRFKWQ RFCSEKDREL EIERLENERL VLENKRMVLQ LKHKEHELDL 420 PTPCVPFKSG PLSLDRP

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MSSSGLGNGF LSGYSGGFLG MNTQQPQLNG NDVGNNRHDR MQSSMDLKLE LENGKRIELL  60
ERKGPAQKGF TMSFGKDKRV FCNNDMSDED EPSLAEDGNG ENEDEAPGKK GSQWQRMKWT  120
NSIVRLLIQV VAYVGDDVCL EGPEGLKRKS GCIQKKGKWK TISKIMISKG CHVSPQQCED  180
KFNDLNKRYK KLNDILGRGT SCAVVENPAL MDSMPQLSAK AKDTVKKILC SKHLFYREMC  240
AYHNGQKIPD CSDLELQIHS SSVATQCSKD NNGCPGDEAE ENDDSVDDES GDEENNTASG  300
DAVKTGTCYE RTENEGNVNL SQSIDNDSFG VEIDEFFQDP TKSQWERKVW IKKRMLQLEE  360
ERVGIEEEAV ELEKRRFKWQ RFCSEKDREL EIERLENERL VLENKRMVLQ LKHKEHELDL  420
PTPCVPFKSG PLSLDRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163696.1	0.0	PREDICTED: uncharacterized protein LOC109160043
Refseq	XP_019163697.1	0.0	PREDICTED: uncharacterized protein LOC109160043
TrEMBL	A0A1S3ZW13	0.0	A0A1S3ZW13_TOBAC; uncharacterized protein LOC107791041
STRING	XP_009768464.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12913	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	5e-65	sequence-specific DNA binding transcription factors