PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000503.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 317aa    MW: 36320.4 Da    PI: 9.5092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000503.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-11201011194
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              +++ r+ +p +f+++h+++  +++   l++e g  W + + +r++++ ++ ++ W eF k ++L  gD ++F l+g+sefe ++
  Itr_sc000503.1_g00002.1  20 HSQERIKIPGDFVKAHKKN-LSERSWALKTEGGSPWHMGI-IRRGRKYFFRRADWVEFSKHHDLHYGDHMMFFLVGNSEFEVLF 101
                              56789***********655.45568***************.3444445666699***********************9996554 PP
2B333.19.7e-112273081297
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               + ++++p +fa+  g+ +  +k ++l+ e+g   ++++    + +r+ l  GWk+F +an++k gD + F+l++ +++e +v ++
  Itr_sc000503.1_g00002.1 227 HKFCMTVPMEFARYTGILH--EKIIKLNCENGTPQKMEI--ASSEKRVRLIYGWKSFREANKIKNGDRCSFTLVNPHTTETMVLLV 308
                              34569*******5556554..45899999***9999999..88999999999*********************9886666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-166107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-158105IPR015300DNA-binding pseudobarrel domain
CDDcd100179.01E-129103No hitNo description
PROSITE profilePS5086311.51910105IPR003340B3 DNA binding domain
SMARTSM010191.9E-711105IPR003340B3 DNA binding domain
PfamPF023626.6E-920101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-15213302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-16213302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.728216311IPR003340B3 DNA binding domain
CDDcd100177.55E-8217301No hitNo description
SMARTSM010193.6E-5219311IPR003340B3 DNA binding domain
PfamPF023622.6E-9227307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKVNPHGYPS FLKTYLGEAH SQERIKIPGD FVKAHKKNLS ERSWALKTEG GSPWHMGIIR  60
RGRKYFFRRA DWVEFSKHHD LHYGDHMMFF LVGNSEFEVL FYSQTTCCEI PPPQPDEHTA  120
TVLSEETDEA SGNAKKQKRK PIICGEYDAS KKAKGSADPG HKNKTVKVEI ISSTESERDE  180
EEYSPDSDSE SEKEAAEGVR KVKGSRFSTL NLKDKQPSFE IIVKKSHKFC MTVPMEFARY  240
TGILHEKIIK LNCENGTPQK MEIASSEKRV RLIYGWKSFR EANKIKNGDR CSFTLVNPHT  300
TETMVLLVKK LPKRGMN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.14e-09B3 family protein