PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000503.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 272aa MW: 32111.8 Da PI: 10.22

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000503.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.7	3.6e-12	15	100	9	93
HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 9 dvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +v+++ r+ +p kf+++h+++ +s t +l++e+g sW++++ +r + + ++ ++ W++F+k ++L+ gD ++ l+g+s fe Itr_sc000503.1_g00001.1 15 YVGETrywERIQIPSKFVDTHKNNLGKS-TWVLKTEDGTSWSMEI-IREGTEYFFSRADWEKFAKHHDLRFGDQIMAFLVGNSVFE 98 555555557899*******8775555.9***********.3555555777799************9998888888885 PP .E CS B3 92 lv 93 + Itr_sc000503.1_g00001.1 99 VM 100 44 PP
2	B3	42.8	9.2e-14	190	267	11	94
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + + +++p +fa+e g++++ k + l+ e+gr+ ++++ ++ +r+ l+kGWk+F kan++++gD + F+l++ ++ +v Itr_sc000503.1_g00001.1 190 SHQTFMCVPIDFARETGIIHQ--KRIELRGEKGRRETMQV--ERLHNRVRLSKGWKSFKKANKIRSGDKCSFTLVNPDCL--FV 267 4445689*******99954..57***********..*****************************9875554..55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-16	6	107	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.5E-15	8	106	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.097	10	105	IPR003340	B3 DNA binding domain
SMART	SM01019	3.3E-8	11	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-9	23	99	IPR003340	B3 DNA binding domain
CDD	cd10017	2.87E-9	24	103	No hit	No description
SuperFamily	SSF101936	1.14E-18	177	271	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-16	177	271	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.744	180	272	IPR003340	B3 DNA binding domain
CDD	cd10017	5.85E-11	181	267	No hit	No description
SMART	SM01019	2.2E-8	183	270	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-11	188	268	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MKVNPHGYPS FMKTYVGETR YWERIQIPSK FVDTHKNNLG KSTWVLKTED GTSWSMEIIR 60 EGTEYFFSRA DWEKFAKHHD LRFGDQIMAF LVGNSVFEVM LYNQTTCCQI LNPNPNHTAN 120 EPLEINEASK NGRKHKRKYE FRNKSKSSDI KEEIFDTKNV KQEDGIQINR FSTTNLNAKF 180 PYFETIIKMS HQTFMCVPID FARETGIIHQ KRIELRGEKG RRETMQVERL HNRVRLSKGW 240 KSFKKANKIR SGDKCSFTLV NPDCLFVKKL RH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185274.1	1e-164	PREDICTED: B3 domain-containing protein REM9-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4888	13	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	2e-12	B3 family protein