PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000501.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 313aa    MW: 34744.5 Da    PI: 7.3604
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000501.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.51.7e-32601912101
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                               g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ +                      
  Itr_sc000501.1_g00026.1  60 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKNEIDELPPLqlpptgifnpnlqqwlcstkeg 145
                              689*************************************************************7777777777777777766666 PP

                      TCP  66 ......ssssasec....eaesssssasnsssgkaaksaakskksq 101
                                    + +s++e     ++++++ ++s++++ ++++  + s++s+
  Itr_sc000501.1_g00026.1 146 lpleprDHKSSKEIaeggDDDDRQDQQSHHHEIDHNNLLPRSHNSS 191
                              6666552222222233332222222222222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-3062190IPR005333Transcription factor, TCP
PROSITE profilePS5136931.81762120IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MITTEVDFSA TTTKPEGTNT TTSDHRNNVN LKVVPAATPT PTSSWTRLKD PRIVRVSRAF  60
GGKDRHSKVC TVRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAAKNEIDEL  120
PPLQLPPTGI FNPNLQQWLC STKEGLPLEP RDHKSSKEIA EGGDDDDRQD QQSHHHEIDH  180
NNLLPRSHNS SSSSSSLPNL MMGNAAQFNS FLRWDPSSSL SLSHHQGGVS EDFHNFNNNV  240
LPSGLAHSFF HPQSIGGGGG GDRQINFQML RPPPPIHDFT THSLRPLRFL APHNHTGAEP  300
ASKENNNEFH STS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1967121155Putative transcription factor PCF6
5zkt_B3e-1967121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157046.11e-143PREDICTED: transcription factor TCP13-like isoform X2
TrEMBLA0A2J6LV198e-70A0A2J6LV19_LACSA; Uncharacterized protein
STRINGXP_009623901.15e-64(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-46plastid transcription factor 1