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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000495.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 519aa MW: 56465 Da PI: 5.3861 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 414.3 | 1.1e-126 | 152 | 515 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 lv++L++cA v+ g+++la +l+ +l+ l + ++g + ++a yf AL++rl+ ++ ++ + + e ++ f Itr_sc000495.1_g00005.1 152 LVHALMTCAVSVQRGEFSLAGSLIDELQLLltRVNSGCGIGKVAGYFIDALSKRLYT--PQGVSLM---GS----AYEDEILYSHF 228 689*************************9987889999******************9..3333222...22....3344456789* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 +e+ P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g +La++A+ Itr_sc000495.1_g00005.1 229 YEAAPYLKFAHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLKLAELAR 314 ************************************************************************************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++v+f f+ ++a+rl+d++ ++L+v ++Ea+aVn+++qlh+ll + s++d+vL ++sl+Pkvv+vveqea+hn+++Fl+r Itr_sc000495.1_g00005.1 315 SVNVRFAFRGVAASRLDDVKSWMLQVGSNEAVAVNSIMQLHKLLGPDPIRGSPIDTVLGWIRSLNPKVVTVVEQEANHNQPEFLDR 400 ********************************************99999999********************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f+e+l+yys++fdslea ++ ++ + +++++rei+nvv+ceg +r+erhe l+kW++rl+ aGFkp++l+++a kqa++ll Itr_sc000495.1_g00005.1 401 FTESLYYYSTMFDSLEAC---PAQPEKALAEMYIQREICNVVCCEGVARVERHEPLGKWKARLTGAGFKPLNLGSNAFKQASMLLT 483 ****************99...566677788888***************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +gy+vee +g+l+lgW++rpL+++SaW+ Itr_sc000495.1_g00005.1 484 LFSAEGYNVEETEGCLTLGWHSRPLIAASAWQ 515 *******************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 5.5E-16 | 28 | 103 | No hit | No description |
Pfam | PF12041 | 4.7E-26 | 28 | 97 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 62.142 | 126 | 495 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-124 | 152 | 515 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MSPHDSSITS SSGSSSSSCS AAHVDQIDSL LAGAGYMVRS SDLRHVAQRL EHLESFMVNS 60 PMGSEISQHL GNDVVHQNPS DLGSWVDSLL SELHPPPVPE FAAPCPSDSN YVAAGPTGWS 120 ECEAMQQQPQ IVSPSHLTVV TATEQEDSGI RLVHALMTCA VSVQRGEFSL AGSLIDELQL 180 LLTRVNSGCG IGKVAGYFID ALSKRLYTPQ GVSLMGSAYE DEILYSHFYE AAPYLKFAHF 240 TANQAILEAF HGHDCVHVID FNLMHGLQWP ALIQALALRP GGPPLLRLTG IGPPSPDGRD 300 SLREIGLKLA ELARSVNVRF AFRGVAASRL DDVKSWMLQV GSNEAVAVNS IMQLHKLLGP 360 DPIRGSPIDT VLGWIRSLNP KVVTVVEQEA NHNQPEFLDR FTESLYYYST MFDSLEACPA 420 QPEKALAEMY IQREICNVVC CEGVARVERH EPLGKWKARL TGAGFKPLNL GSNAFKQASM 480 LLTLFSAEGY NVEETEGCLT LGWHSRPLIA ASAWQASRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-60 | 140 | 514 | 7 | 378 | Protein SCARECROW |
5b3h_A | 3e-60 | 140 | 514 | 6 | 377 | Protein SCARECROW |
5b3h_D | 3e-60 | 140 | 514 | 6 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11487693, ECO:0000269|PubMed:11606551, ECO:0000269|PubMed:11606552, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:17933900, ECO:0000269|PubMed:25035403, ECO:0000269|PubMed:9389651}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192394.1 | 0.0 | PREDICTED: DELLA protein DWARF8-like | ||||
Swissprot | Q9LQT8 | 1e-161 | GAI_ARATH; DELLA protein GAI | ||||
TrEMBL | A0A328CVB6 | 0.0 | A0A328CVB6_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484NC12 | 0.0 | A0A484NC12_9ASTE; Uncharacterized protein | ||||
STRING | XP_010249953.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15141 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-138 | GRAS family protein |