PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000494.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 788aa    MW: 87123.3 Da    PI: 6.8498
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000494.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-21103158156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Itr_sc000494.1_g00001.1 103 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 158
                              7999************************************************9877 PP
2START216.59.3e-683045276206
                              HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                    START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                              a++el k+a++++p+W +s     e++n+de+++ f+ +k+        +s+ea+r++g+v+m+l++lv++++d + qW+e+++  
  Itr_sc000494.1_g00001.1 304 ALEELKKMASSGAPLWIRSFetgrEILNYDEYVKAFSVDKSaptaalpkRSIEASRDTGIVFMELHRLVQSFMDAN-QWKEMFPcm 388
                              688999*************99***************99999***********************************.********* PP

                              ..EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                    START  78 ..kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                                ka+t++vis g        ga qlm+ae q+l+p+v  R+++fvRy++ql+++ w+ivdvSvd  +++  ++s+v+++++pSg+
  Itr_sc000494.1_g00001.1 389 isKAATVDVISVGegangnwnGAAQLMFAEVQMLTPVVGtREVYFVRYCKQLSGDEWAIVDVSVDKVEDNI-DASLVKCRKRPSGC 473
                              *********************************************************************98.9************* PP

                              EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +i++ksngh+kvtwveh +++++++h+l+rs+v+sg a+ga++w+ tlq++ce+
  Itr_sc000494.1_g00001.1 474 IIHDKSNGHCKVTWVEHLECQKSTVHSLYRSIVNSGSAFGAQHWMVTLQQHCER 527
                              ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2290154IPR009057Homeodomain-like
SuperFamilySSF466891.03E-2092161IPR009057Homeodomain-like
PROSITE profilePS5007118.091100160IPR001356Homeobox domain
SMARTSM003893.2E-19102164IPR001356Homeobox domain
PfamPF000469.1E-19103158IPR001356Homeobox domain
CDDcd000861.87E-17107158No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084838.056290530IPR002913START domain
SuperFamilySSF559611.14E-33292527No hitNo description
CDDcd088752.90E-105294526No hitNo description
SMARTSM002342.9E-62299527IPR002913START domain
PfamPF018522.3E-54304527IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-5357527IPR023393START-like domain
SuperFamilySSF559611.28E-12570781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MGVVEMSNNP PASRPADSFP SPALSLSLAG IFRDAAAARA GNAADAETAE EGSAGGRREE  60
TVEISSENSG PARSRSDDDF DGDREHDDNY NDEDDDNAKK KKRKKYHRHT AEQIREMEAL  120
FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK SEIEKLRDQN  180
KELRETIKNN CCPNCGFASS PAGKDPMVAG TGGEQQLRIE NARLRAERAK EVNQPRLPIA  240
DRLKPGWQTV EKLRAAVGKY PAGTSPNNSS CSGGNEQESR SALDFYTGIF GLEKSRIMDV  300
VNVALEELKK MASSGAPLWI RSFETGREIL NYDEYVKAFS VDKSAPTAAL PKRSIEASRD  360
TGIVFMELHR LVQSFMDANQ WKEMFPCMIS KAATVDVISV GEGANGNWNG AAQLMFAEVQ  420
MLTPVVGTRE VYFVRYCKQL SGDEWAIVDV SVDKVEDNID ASLVKCRKRP SGCIIHDKSN  480
GHCKVTWVEH LECQKSTVHS LYRSIVNSGS AFGAQHWMVT LQQHCERLVF YMATNVPTKD  540
STGVATLAGR KSILTLAQRM SVAFFRALGA SSYNTWNKIP TKTGDDIRVA SRKNLSDPGE  600
PLGVILCAVS SVWLPVSHHA LFEFLRDETH RHEWDIMSNR GPVESIANLA KGQDRGNAVT  660
ILATKSKENN MWLLQDTCTN VYESMVVYAP VDITSMQSVM TGCDSSNTAI LASGFSILPD  720
GLDSRPLVIT SKPEEKSTEG GSLLTIAFQI LTSNSPTAKL SMESVDSLNN LVSCTLQKIK  780
KCLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKKKRK
298104KKKKRKK
3100104KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196967.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2 isoform X2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2R6PTR70.0A0A2R6PTR7_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_009778213.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]