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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000489.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 507aa MW: 58126.3 Da PI: 4.6342 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 151 | 1.1e-46 | 141 | 506 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +lL + Aea+ + + ela+++ ++ a+ g++++R+a +++ + + + +++ ++ +a+k++++v Itr_sc000489.1_g00008.1 141 HLLEAYAEAMGDMQRELAKEIAGCIRRKANALGETLERVAYNVVQTSEDQGGS------------YLRREAIKNYETAFKVLYQVL 214 66666777777777777777777777777777777777776665544443333............3333346667778999***** PP GRAS 89 PilkfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 P +f+h+ aN+aIlea+ +g+e+v iiDfd++ G+QWp+L++++a+ lR+T v+++e++ + + e+t +rL + A+ Itr_sc000489.1_g00008.1 215 PHGRFAHFSANSAILEAIpDGAEAVRIIDFDMGDGVQWPSLIESMAQT---RRALRLTSVKREEEStsHLWRFEQTTRRLYEHAKP 297 *****************94567************************74...567********8888878889************** PP GRAS 172 lgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP......kvvvvveqeadhns 250 lgv+++++ + +++ +++ + + k++E la n++++l ++ ++++ ++ ++L++ k+lsP +vv+++ e+ + s Itr_sc000489.1_g00008.1 298 LGVKLQIEEMsIEELVNEAKRTKKTGKRKEWLAFNCMFRLPHMTNRQQRSQA--MQFLEIAKELSPysaiqsGIVVFADGESGCWS 381 ********99333355556666666677***************966655555..99*****9999844444469*******99977 PP GRAS 251 esFle...rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 +sF + f + l +y +lf+s+e +p + e+ri vE +l++++++ + ++++++ ++ e+G++ +ls + Itr_sc000489.1_g00008.1 382 SSFSDyssFFNRQLVHYKSLFESMEWHFPVNLtEARIAVESLFLAPHACSDSWFHDWQ----ENKMKSISNLRAEMGLQGRKLSIE 463 766542216999*****************98779************987655555554....55666777777789********** PP GRAS 333 aakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 + qak ++++ +s yrv e++++++l W++ pLv vS W Itr_sc000489.1_g00008.1 464 NILQAKEMVNERESP-YRVRieeENQHEMILEWRETPLVRVSTW 506 *************66.77765556689999************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.338 | 113 | 485 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-44 | 141 | 506 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MMQPQIFHPS WLSYETNYST SPCTGSLSFF EDVFVTDNSY VSPVITADSS GLDSTLFHDD 60 VPEFAYLPPL LEGDVSMDDI EDVCRWLNNE ESEEGTNNTS SELTKDVLSP DFSVVSAEDY 120 SMAVLPGNGV EVDDSHWCLL HLLEAYAEAM GDMQRELAKE IAGCIRRKAN ALGETLERVA 180 YNVVQTSEDQ GGSYLRREAI KNYETAFKVL YQVLPHGRFA HFSANSAILE AIPDGAEAVR 240 IIDFDMGDGV QWPSLIESMA QTRRALRLTS VKREEESTSH LWRFEQTTRR LYEHAKPLGV 300 KLQIEEMSIE ELVNEAKRTK KTGKRKEWLA FNCMFRLPHM TNRQQRSQAM QFLEIAKELS 360 PYSAIQSGIV VFADGESGCW SSSFSDYSSF FNRQLVHYKS LFESMEWHFP VNLTEARIAV 420 ESLFLAPHAC SDSWFHDWQE NKMKSISNLR AEMGLQGRKL SIENILQAKE MVNERESPYR 480 VRIEEENQHE MILEWRETPL VRVSTWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-16 | 158 | 506 | 23 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161123.1 | 1e-178 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A314KSF5 | 1e-158 | A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein | ||||
STRING | PGSC0003DMT400068507 | 1e-149 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 4e-22 | GRAS family protein |