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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000480.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10025.3 Da PI: 7.5089 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 18 | 66 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT+e + + +a + + ++ +W+ +a+ +g g+t++++k ++q + Itr_sc000480.1_g00001.1 18 GSWTAEQNKEFEKALAVYDKDipdRWSNVAKAVGGGKTAEDVKIHYQLL 66 79********************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8E-7 | 16 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-8 | 18 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.47E-13 | 18 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 18 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.597 | 18 | 67 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.65E-6 | 19 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MASNNAMPSG HGCSSGPGSW TAEQNKEFEK ALAVYDKDIP DRWSNVAKAV GGGKTAEDVK 60 IHYQLLVRDV IYIERGLVPF PDYQKTAWKL A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-26 | 12 | 86 | 2 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165820.1 | 2e-53 | PREDICTED: protein RADIALIS-like 2 | ||||
Swissprot | Q1A173 | 2e-26 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1U8FNU6 | 7e-32 | A0A1U8FNU6_CAPAN; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1U8FNV2 | 7e-32 | A0A1U8FNV2_CAPAN; protein RADIALIS-like 1 | ||||
STRING | Lus10023568 | 3e-33 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-28 | RAD-like 1 |