PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000473.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 279aa MW: 30996.9 Da PI: 9.7136

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000473.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.1	1.7e-18	62	151	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k +++s++ + +l lpk+f+++h + + ++l de+g+++e k+ +++++ l++GW++F +++L +gD++vF+l++ Itr_sc000473.1_g00009.1 62 VKFMLHSHTASGFWLGLPKDFCTSHLPN--HNAAIILVDENGKEMETKYLVERHG----LSGGWRGFSVDHNLIAGDVLVFQLIE- 140 68899******************533..4558***********666666....*******************985. PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 f+l+v ++r+ Itr_sc000473.1_g00009.1 141 -PFKLKVYIVRA 151 .999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-20	54	152	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-23	54	152	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.82E-25	59	150	No hit	No description
SMART	SM01019	1.6E-21	61	152	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.084	61	152	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.8E-16	62	151	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSSLAANKKV IKRRSPTPKK VQAKGEGSNS RRDCDSVDEN SLPMRRAREL QANLSPQFPS 60 LVKFMLHSHT ASGFWLGLPK DFCTSHLPNH NAAIILVDEN GKEMETKYLV ERHGLSGGWR 120 GFSVDHNLIA GDVLVFQLIE PFKLKVYIVR ANDSTNIECA ISLLNLSHSA QPIANDYSIK 180 VMMISHNLAS SVVYLIQFQC AFCLELKAKV KDVSGHNHDR GCESDLPEAF FIPGLRLTLT 240 TVSVSVRPGV RKFFAMVTIA LRAMTLIGRS GIRCNSQWS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199015.1	1e-112	PREDICTED: B3 domain-containing protein Os03g0184500-like
TrEMBL	A0A484N113	4e-66	A0A484N113_9ASTE; Uncharacterized protein
STRING	XP_009778966.1	4e-60	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-39	B3 family protein