PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000473.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 447aa MW: 49607.6 Da PI: 7.1042

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000473.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.8	7.1e-17	87	176	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k +++s+++ +l lpkkf+++h + + ++l de+g+++e k+ ++k++ l++GW++F a++L +gD+vvF+l++ Itr_sc000473.1_g00007.1 87 VKFMLHSHTSGGFWLGLPKKFCTAHLPN--HNAAIVLVDENGEEMETKYLVEKSG----LSAGWRGFSLAHKLIAGDVVVFQLIK- 165 5889999999*************533..4558***********777777....*********************986. PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++v ++r+ Itr_sc000473.1_g00007.1 166 -PLKMKVYIVRA 176 .77788888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.47E-22	79	177	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-19	79	177	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.11E-23	84	175	No hit	No description
PROSITE profile	PS50863	12.041	86	177	IPR003340	B3 DNA binding domain
SMART	SM01019	3.9E-20	86	177	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-14	87	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAISSVYSSR NSPSDSSSSE LEKMKALTDN KKAVNRGSPP PKKSKVMFKA KSEVVKKEYM 60 CVDEKSLAMR RAQELQANLS PEFPSVVKFM LHSHTSGGFW LGLPKKFCTA HLPNHNAAIV 120 LVDENGEEME TKYLVEKSGL SAGWRGFSLA HKLIAGDVVV FQLIKPLKMK VYIVRANVLP 180 DVAGAISLLN LSHSAQPIAN EALLQQSEDN KENVVRIGNA ADRITRIHHQ GDDQPREIST 240 SDHCPESNVS GNDIDNSSPQ TSSNGLRFAE AVVDFAQVED FEGFNIVVNN IIIDSEIPEA 300 HRLKYYELCC SRKAYLHERL LDGTNYKLIA GAITETVNIA DAIRAAKLTT GRDVLEVWDT 360 TLKGIEYFGI QVGFLRDRIS KLVRLSGDNV VASKKKEKAL AEAEMMDLRG KMWRVREVIN 420 NLDAEILAYS SKDKVEELFK DAANAAW

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAISSVYSSR NSPSDSSSSE LEKMKALTDN KKAVNRGSPP PKKSKVMFKA KSEVVKKEYM  60
CVDEKSLAMR RAQELQANLS PEFPSVVKFM LHSHTSGGFW LGLPKKFCTA HLPNHNAAIV  120
LVDENGEEME TKYLVEKSGL SAGWRGFSLA HKLIAGDVVV FQLIKPLKMK VYIVRANVLP  180
DVAGAISLLN LSHSAQPIAN EALLQQSEDN KENVVRIGNA ADRITRIHHQ GDDQPREIST  240
SDHCPESNVS GNDIDNSSPQ TSSNGLRFAE AVVDFAQVED FEGFNIVVNN IIIDSEIPEA  300
HRLKYYELCC SRKAYLHERL LDGTNYKLIA GAITETVNIA DAIRAAKLTT GRDVLEVWDT  360
TLKGIEYFGI QVGFLRDRIS KLVRLSGDNV VASKKKEKAL AEAEMMDLRG KMWRVREVIN  420
NLDAEILAYS SKDKVEELFK DAANAAW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199407.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A328DL04	1e-142	A0A328DL04_9ASTE; Uncharacterized protein
STRING	XP_009612763.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-39	B3 family protein