PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000471.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 356aa MW: 39863.9 Da PI: 7.051

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000471.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7.2e-30	237	292	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eL + Fv+a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Itr_sc000471.1_g00002.1 237 KQRRCWSQELQKLFVNALHQLGGPHVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 292 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.31E-17	234	295	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.966	234	294	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-27	234	295	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-26	237	292	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	239	290	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSTIGDASER VSMIDDYVRR LEEEMRKIDA FKRELPLCML LVNDAIVALK EEAVQCRRSR 60 VEPVLEEFIP LKKSSDDDDD KIETRRERGS REKVDWMNSV QLWSSGNNHC LSSKNDLKLV 120 KEQSLNLFFF PPSDTVTNPL TGLCPPLLGR TTSLAIEEEE NSSVTNDLLV SGKTMNPGKT 180 SAVPGLLLGT PAREYMVIGG LSSMDCVSRA AASSTASSSV RPQYHHHHQQ QQQTSRKQRR 240 CWSQELQKLF VNALHQLGGP HVATPKQIRE LMKVEGLTND EVKSHLQKYR LHIRRSAHTN 300 TSSANRFAPQ SGSPQGPLGT SLTRDNNMTE EEEEDDDDKS GRQIPKILTL TSKNGA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSTIGDASER VSMIDDYVRR LEEEMRKIDA FKRELPLCML LVNDAIVALK EEAVQCRRSR  60
VEPVLEEFIP LKKSSDDDDD KIETRRERGS REKVDWMNSV QLWSSGNNHC LSSKNDLKLV  120
KEQSLNLFFF PPSDTVTNPL TGLCPPLLGR TTSLAIEEEE NSSVTNDLLV SGKTMNPGKT  180
SAVPGLLLGT PAREYMVIGG LSSMDCVSRA AASSTASSSV RPQYHHHHQQ QQQTSRKQRR  240
CWSQELQKLF VNALHQLGGP HVATPKQIRE LMKVEGLTND EVKSHLQKYR LHIRRSAHTN  300
TSSANRFAPQ SGSPQGPLGT SLTRDNNMTE EEEEDDDDKS GRQIPKILTL TSKNGA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170315.1	0.0	PREDICTED: myb family transcription factor EFM-like
TrEMBL	A0A0V0I6V0	1e-84	A0A0V0I6V0_SOLCH; Putative two-component response regulator-like APRR2-like
STRING	Solyc01g108300.2.1	5e-84	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-41	G2-like family protein