PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000467.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 427aa    MW: 47954.2 Da    PI: 4.9711
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000467.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141452644
                             HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             +  r+ tf kR++gi+KK  E  +LCd+++++ii++++ 
  Itr_sc000467.1_g00001.1 14 EKARNLTFKKRKEGIMKKMREFTTLCDVNACMIIYGPNS 52
                             66799*******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.82153IPR002100Transcription factor, MADS-box
CDDcd002663.62E-19269No hitNo description
SuperFamilySSF554555.1E-18279IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRAKLNLEL IPKEKARNLT FKKRKEGIMK KMREFTTLCD VNACMIIYGP NSQSSEPAIW  60
PNDRSEVERM IELYKEKVAD NATRSYGISN FFMDRKKKLE EEVRKLKQKN LEAKYPTSLE  120
FMDRLSKAEL ENFVRFLNGK LEASASRLEM MNEISNDVNG ELQQQSQAMQ IFQGYNNNQD  180
YMNSVIDPMQ MDNLGYVNPL QQQVVYNSPN LILDDDQEKN YGLLGYANPN PTPGRMIPMM  240
KETEYMHFAG GASSSNSGGA GGYIIYNNDT FQAGFRQQQQ QINFYEPVGA GMSSNVMQAQ  300
YSMDRTTMQL AMAPPPPYMG GDLPPLPPCY LEMNEVKCTL PGLPGGGVNF PPQIISPPSY  360
NYYLEDKETN NNNSSTLLPP PQAAAGSGLP QLAPPYSCTE EKEEAAAAGS SSINHYHQLT  420
NQITRFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171499.10.0PREDICTED: agamous-like MADS-box protein AGL8 homolog
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.18e-21AGAMOUS-like 82