PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 248aa MW: 26358 Da PI: 4.7716

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000461.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.9e-19	61	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Itr_sc000461.1_g00011.1 61 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 111 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.5E-13	61	111	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.2E-32	62	120	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-37	62	125	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-21	62	120	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.565	62	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	63	74	IPR001471	AP2/ERF domain
CDD	cd00018	1.90E-30	63	121	No hit	No description
PRINTS	PR00367	1.9E-10	85	101	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAEAETHSSE AESYANSSSS TSPNSSMQDS VLLGPSSGGV EVKTPAKWRG KRGRESGHRH 60 PVYRGVRMRS WGKWVSEIRE PRKKSRIWLG TYPTAEMAAR AHDVAALSIK GSSAILNFPH 120 LAASLPAPTS RSPRDVQAAA AKAAAMEDLN SSSSSHSSSS LSTSASSSEC ASAATLASDE 180 LGEIIELPPL EGSVDFLESN AELNVADVAA EGWVYPPWWA SDGEEFFGYF LDQEGVSLGD 240 CVFPESFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-21	53	120	5	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097920	3e-36	BT097920.1 Soybean clone JCVI-FLGm-11H10 unknown mRNA.
GenBank	FJ228453	3e-36	FJ228453.1 Glycine max AP2 domain-containing transcription factor 1 (AP2-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196657.1	1e-121	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	1e-56	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A2G9HTV6	3e-71	A0A2G9HTV6_9LAMI; Uncharacterized protein
TrEMBL	A0A3Q7GXB5	2e-71	A0A3Q7GXB5_SOLLC; Uncharacterized protein
STRING	Solyc06g066540.1.1	3e-72	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	6e-47	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]