PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000461.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 368aa    MW: 39563.4 Da    PI: 6.9592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000461.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-14111155347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Itr_sc000461.1_g00001.1 111 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVTTRTPTQVASHAQKY 155
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.0E-4223IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.298104160IPR017930Myb domain
SuperFamilySSF466891.2E-17106161IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-18107159IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-11108154IPR009057Homeodomain-like
SMARTSM007171.5E-11108158IPR001005SANT/Myb domain
PfamPF002491.3E-11111155IPR001005SANT/Myb domain
CDDcd001671.51E-9111156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTRRCSHCSN DGHNSRTCPS RGGGGGGAAA AGGSVRIFGV RLTDGSIMKK SASMGNLQGS  60
FMKKSASMGN LSGGGAAAAS PAHSTDGYLS DDPAHGSSST DRRAERKKGV PWTEEEHRLF  120
LLGLQKLGKG DWRGISRNFV TTRTPTQVAS HAQKYFIRQS NATRRKRRSS LFDMVPDAGI  180
DPQPMPEEQF MLPPQALETE TAELVPSASK AVETDSADSL PSLDLSLRPD VDSMDATPTE  240
LVQDPRENFT VTTEIPLLYP QFIPAYIPIP FPIWPSNAVA LDEDRGAESS RHQILKPIPV  300
VPKEPVNVDE LVGMSQLSLG ETRSGQKDAL PLSLKLTGES SRQSAFHART PENSSEISKG  360
ETTPIQAL
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196959.10.0PREDICTED: transcription factor MYB1R1-like isoform X2
SwissprotQ7XC571e-101MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2G3B3431e-170A0A2G3B343_CAPCH; Transcription factor MYB1R1
STRINGXP_009626737.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-55MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]