PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000460.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 355aa    MW: 38991.2 Da    PI: 8.3482
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000460.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.47.1e-2584128145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Itr_sc000460.1_g00002.1  84 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 128
                              79****************************************986 PP
2QLQ66.18.2e-232358237
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++
  Itr_sc000460.1_g00002.1 23 PFTAVQWQELEHQAMIYKYLVAGVPVPPDLVVPIRR 58
                             9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-132258IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.2822358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-172357IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76284128IPR014977WRC domain
PfamPF088794.2E-2185127IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSGTSTSVSG GGGVGYGYGF RPPFTAVQWQ ELEHQAMIYK YLVAGVPVPP DLVVPIRRSF  60
DALSSRFFHH PTLGYCSYYG KKFDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN  120
RSRKPVESQS ASQPLSTAMS HVTSGSSVTS GSFQSTDRSF QNMPLYSIAN SEGLCYGSPA  180
TATKLQMESA SYGRDNKDFW YTHGMNPNAD EHNFPPETSA SVGSLGMGSN IDSTWPPVQF  240
QVSSSPMLKL KNESLLLGSS SSNVHLPGGV YEPIADATIP KQRQQHCLFG SDINSPGTVK  300
QEQQSMRPFF SEWPATKESW SNLDSDGSNK TQLSISIPVT TSDFPSRNAS SQNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152287.10.0PREDICTED: growth-regulating factor 3-like
RefseqXP_019152288.10.0PREDICTED: growth-regulating factor 3-like
RefseqXP_019152289.10.0PREDICTED: growth-regulating factor 3-like
SwissprotQ6AWY61e-87GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A1S4AZ621e-179A0A1S4AZ62_TOBAC; growth-regulating factor 4-like isoform X2
STRINGXP_009605688.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-51growth-regulating factor 5