PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000455.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 607aa    MW: 66903.8 Da    PI: 8.0693
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000455.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.61.3e-08402452251
                              XXXCHHHCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   2 kelkrerrkqk.NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                              +++k ++++ + NReA r++R++Kka+ + Le++v  L + N++L k+l+ 
  Itr_sc000455.1_g00007.1 402 SADKIAKKRPSgNREAVRKYREKKKARAASLEDEVVRLRTINQQLLKRLQG 452
                              567777777666**********************************99974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5142025.2781177No hitNo description
SMARTSM001733.6E-244180No hitNo description
Gene3DG3DSA:3.40.50.3004.4E-645196IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.3E-536178IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd041331.12E-1326178No hitNo description
TIGRFAMsTIGR002313.2E-357171IPR005225Small GTP-binding protein domain
PRINTSPR004491.1E-36728No hitNo description
SMARTSM001751.9E-297180No hitNo description
PfamPF000718.2E-528178IPR001806Small GTPase superfamily
SMARTSM001742.6E-1189180No hitNo description
PRINTSPR004491.1E-363046No hitNo description
PRINTSPR004491.1E-364769No hitNo description
PRINTSPR004491.1E-36109122No hitNo description
PRINTSPR004491.1E-36155177No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-12399470No hitNo description
SMARTSM003382.2E-8401469IPR004827Basic-leucine zipper domain
PfamPF077161.8E-12404451IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-6406450No hitNo description
CDDcd146866.78E-11407461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0009958Biological Processpositive gravitropism
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005730Cellular Componentnucleolus
GO:0005737Cellular Componentcytoplasm
GO:0005819Cellular Componentspindle
GO:0005886Cellular Componentplasma membrane
GO:0030427Cellular Componentsite of polarized growth
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD  60
TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW IPELRHYAPG VPIILVGTKL  120
DLREDKQFFL DHPGAIPITT AQGEELKKLI GAAAYIECSA KTQQNVKAVF DAAIKVVLQP  180
PKQKKKKKRK GQKGCSILSV HPGCCIFAIF PDMFEVVMLH NSSVCPLNLT AIPINYFSAP  240
VALCCYCSTM FYDRCIVIQL NVKTNKMELR YPLLTTDRVQ VFFLFPKSNS LLSLIAGPQG  300
AIPSPILSIG FRYSNLMDDG ELEFSNHEML SSPPCIGEFP DSSSMGSFWN DILSDTHACT  360
HTHTCNPPGP DNSHTHTCYH VHTKIVPATS EDKAPSDDTA ESADKIAKKR PSGNREAVRK  420
YREKKKARAA SLEDEVVRLR TINQQLLKRL QGQAVLEAEI ARLKCLLVDI RGRIEGEIGS  480
FPYQKPVKSG DLYPNLANPT LPGAYIMNPC NMHCNDQVYC LHHGSEGKSS EGTTLNNQGT  540
SNCEFESLQC FGNQTSGLNE LPGCGVGSNM STRNATGKTK KKEGILNFLT IMLNQFHIDM  600
TKDWIAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2nty_C1e-12011801180Rac-like GTP-binding protein ARAC5
2nty_D1e-12011801180Rac-like GTP-binding protein ARAC5
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180189PKQKKKKKRK
2183189KKKKKRK
3184189KKKKRK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29892452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.13e-89bZIP family protein