PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000453.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12734.7 Da    PI: 9.9846
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000453.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.63e-322575151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  Itr_sc000453.1_g00004.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 75
                             79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.9921777IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-311898IPR002100Transcription factor, MADS-box
CDDcd002655.19E-411882No hitNo description
PRINTSPR004048.2E-341939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003191.9E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-343954IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-345475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEFQSDQSRE MSPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNRNEL LVWVFPRFSR PCPQSAVQES TELLVLVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-231791175Myocyte-specific enhancer factor 2B
1tqe_Q3e-231791175Myocyte-specific enhancer factor 2B
1tqe_R3e-231791175Myocyte-specific enhancer factor 2B
1tqe_S3e-231791175Myocyte-specific enhancer factor 2B
6c9l_A3e-231791175Myocyte-specific enhancer factor 2B
6c9l_B3e-231791175Myocyte-specific enhancer factor 2B
6c9l_C3e-231791175Myocyte-specific enhancer factor 2B
6c9l_D3e-231791175Myocyte-specific enhancer factor 2B
6c9l_E3e-231791175Myocyte-specific enhancer factor 2B
6c9l_F3e-231791175Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0061821e-109AB006182.1 Ipomoea nil duplicated mRNA, complete cds.
GenBankAB2811921e-109AB281192.1 Ipomoea nil DP gene for DUPLICATED protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169239.12e-49PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_019169240.12e-49PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_019169242.11e-49PREDICTED: floral homeotic protein AGAMOUS isoform X2
SwissprotQ408851e-47AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLQ76N624e-48Q76N62_IPONI; duplicated protein
STRINGMigut.M00986.1.p2e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]