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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000452.1_g00014.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 106aa MW: 12391.4 Da PI: 10.6295 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 55.2 | 1.9e-17 | 8 | 86 | 1 | 59 |
trihelix 1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnk 59
+Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf sp+qC++k+++lnk
Itr_sc000452.1_g00014.1 8 KWTDNMVRLLIMVVYYIGDEVGSEGnstnptagnkkkagasvgvlQKKGKWKSVSQAMMERGFYMSPQQCEDKFNDLNK 86
7**************9999988643366788888999999**************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 5.2E-15 | 6 | 86 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 106 aa Download sequence Send to blast |
MCSWQRMKWT DNMVRLLIMV VYYIGDEVGS EGNSTNPTAG NKKKAGASVG VLQKKGKWKS 60 VSQAMMERGF YMSPQQCEDK FNDLNKPRAR LSRIKPCWKH WIYRQR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009788508.1 | 1e-42 | PREDICTED: ESF1 homolog | ||||
| TrEMBL | A0A1U7XCB6 | 3e-41 | A0A1U7XCB6_NICSY; ESF1 homolog | ||||
| STRING | XP_009788508.1 | 5e-42 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA6710 | 22 | 31 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76870.1 | 5e-25 | |||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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